PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0987s0050.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | LSD | ||||||||
Protein Properties | Length: 170aa MW: 17498.5 Da PI: 7.7213 | ||||||||
Description | LSD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-LSD1 | 41.9 | 1.6e-13 | 39 | 63 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C+gCr+lL YP GA+sV+Ca+C++V SapurV1A.0987s0050.1.p 39 CSGCRNLLLYPVGATSVCCAVCNAV 63 ************************9 PP | |||||||
2 | zf-LSD1 | 44 | 3.7e-14 | 78 | 102 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C gC+tlL+Y rGA+sV+C++C+tV SapurV1A.0987s0050.1.p 78 CVGCHTLLMYIRGATSVQCSCCHTV 102 ************************9 PP | |||||||
3 | zf-LSD1 | 41.5 | 2.2e-13 | 129 | 153 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+Cr lL+Y +GA+sV+Ca+C++V SapurV1A.0987s0050.1.p 129 CGSCRMLLMYQYGARSVKCAVCNFV 153 ***********************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
TIGRFAMs | TIGR01053 | 1.3E-12 | 36 | 66 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 1.8E-10 | 39 | 63 | IPR005735 | Zinc finger, LSD1-type |
SuperFamily | SSF48695 | 1.95E-5 | 39 | 150 | IPR011031 | Multihaem cytochrome |
TIGRFAMs | TIGR01053 | 1.3E-13 | 75 | 104 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 2.1E-11 | 78 | 102 | IPR005735 | Zinc finger, LSD1-type |
TIGRFAMs | TIGR01053 | 3.5E-13 | 126 | 154 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 2.9E-12 | 129 | 153 | IPR005735 | Zinc finger, LSD1-type |
Sequence ? help Back to Top |
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Protein Sequence Length: 170 aa Download sequence Send to blast |
MPVPLAPYPT PPAPYAPPAP APAPAPPPPA NGAQSQLVCS GCRNLLLYPV GATSVCCAVC 60 NAVTAVPPPG TEMAQLVCVG CHTLLMYIRG ATSVQCSCCH TVNLALEGKE PENLLLFNHS 120 ANQVAHVNCG SCRMLLMYQY GARSVKCAVC NFVTPVGVSS SIHSSFISC* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Positive regulator of reactive oxygen-induced cell death. May be involved in the repression of the copper/zinc superoxide dismutase CSD1 and CSD2 that detoxify accumulating superoxide before the reactive oxygen species (ROS) can trigger a cell death cascade. LSD1 and LOL1 have antagonistic effects on CSD1 and CSD2 accumulation to regulate oxidative stress-induced cell death. {ECO:0000269|PubMed:12732715}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0987s0050.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CU232247 | 6e-49 | CU232247.1 Populus EST from mild drought-stressed leaves. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021593714.1 | 4e-80 | protein LOL1 | ||||
Refseq | XP_021593716.1 | 4e-80 | protein LOL1 | ||||
Refseq | XP_021593717.1 | 4e-80 | protein LOL1 | ||||
Refseq | XP_021593718.1 | 4e-80 | protein LOL1 | ||||
Swissprot | Q93ZB1 | 5e-71 | LOL1_ARATH; Protein LOL1 | ||||
TrEMBL | A0A2G5CN89 | 8e-81 | A0A2G5CN89_AQUCA; Uncharacterized protein | ||||
STRING | Aquca_044_00148.1 | 1e-81 | (Aquilegia coerulea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF8187 | 33 | 46 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G32540.3 | 8e-55 | lsd one like 1 |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0987s0050.1.p |
Publications ? help Back to Top | |||
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