PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0986s0010.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family ARF
Protein Properties Length: 713aa    MW: 79286.1 Da    PI: 8.2302
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0986s0010.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B373.13.5e-23124225199
                             EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EE CS
                      B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfv 80 
                             f k+lt+sd+++ g +++p+ +ae +         ++ +  tl  +d +g++W++++iyr++++r++lt+GW+ Fv+ ++L +gD+v
  SapurV1A.0986s0010.1.p 124 FAKTLTQSDANNGGGFSVPRYCAEMIfprldysADPPVQ--TLLAKDVHGETWKFRHIYRGTPRRHLLTTGWSPFVNHKKLVAGDSV 208
                             89*********************999****996555545..8999****************************************** PP

                             EEEE-SSSEE..EEEEE-S CS
                      B3  81 vFkldgrsefelvvkvfrk 99 
                             vF   + +++ l+v+v+r+
  SapurV1A.0986s0010.1.p 209 VFL--RAENGDLCVGVRRA 225
                             ***..4488889****996 PP
2Auxin_resp99.74.1e-33293376183
              Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                             aa+ a+ + +Fe vY+Pra t+eF+vk++ v++ ++++++ G Rfkmafetedss++++ +Gtv +v+d+dp+ Wp+S+Wr+L+
  SapurV1A.0986s0010.1.p 293 AATLAADGLPFETVYYPRANTPEFCVKASLVKTVMQIRWCSGIRFKMAFETEDSSRISWfMGTVCSVQDADPLCWPGSPWRLLQ 376
                             6788999***************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.3E-37113230IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.01E-30118242IPR015300DNA-binding pseudobarrel domain
CDDcd100171.59E-20123224No hitNo description
SMARTSM010194.4E-21124226IPR003340B3 DNA binding domain
PROSITE profilePS5086312.83124226IPR003340B3 DNA binding domain
PfamPF023626.4E-21124225IPR003340B3 DNA binding domain
PfamPF065071.3E-28293376IPR010525Auxin response factor
PROSITE profilePS5174514.478619697IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 713 aa     Download sequence    Send to blast
MITFMEAKEI LKEEADKCLD SQLWHACAGG MVQMPAVNSK VFYFPQGHAE HACEPVDFRN  60
VPGASHILCR VSAIKFMADP ETDEVFAKIR LVPINSNELY LDDQEVAVNG EKEAAQDNNK  120
PVSFAKTLTQ SDANNGGGFS VPRYCAEMIF PRLDYSADPP VQTLLAKDVH GETWKFRHIY  180
RGTPRRHLLT TGWSPFVNHK KLVAGDSVVF LRAENGDLCV GVRRAKRAVS GGPESLWNPA  240
LGNSPVPYGG FGWSSREDEH KMMKNGSGTG NGSKSNESLM GRGRVRAESV VQAATLAADG  300
LPFETVYYPR ANTPEFCVKA SLVKTVMQIR WCSGIRFKMA FETEDSSRIS WFMGTVCSVQ  360
DADPLCWPGS PWRLLQVTWD EPDLLQNVKR VSPWLVEVAS NMSAIHFPPF QSPRKKLRLP  420
QHLDFPIAGQ FPMPIFSGSL LQPSSPFGFL PNNIPAGMQG ARHAHYGLPL SDLHLKKLHT  480
GLLRAGFPPL LDHTASLTKA SNIQIIQKPS LSEVVSCELT MSHSTSNSKR ADDVKIPQLV  540
LFGQRIVAEQ HISRSCSDNT ESSVLTRNSC FEGKLNKVGF RSEGSVSTLH HRGPSEHSSR  600
EGLQWNKDSH LKSEQSFKIG HCKVFLESED VGRSLDLRLL ESYEELYRKL ADMFGRLNSE  660
KFSNLLYRDV NGITKHVGEE PFSDFSRTAR RLTIVTDSGS HDNNVGGMWR KK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A8e-81340332394Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0986s0010.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT5854790.0KT585479.1 Populus tomentosa auxin response factor 16 (ARF16) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011007683.10.0PREDICTED: auxin response factor 18-like
SwissprotQ653H70.0ARFR_ORYSJ; Auxin response factor 18
TrEMBLB9IFN40.0B9IFN4_POPTR; Auxin response factor
STRINGPOPTR_0016s09150.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF63734138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30080.10.0auxin response factor 16
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Huang J,Li Z,Zhao D
    Deregulation of the OsmiR160 Target Gene OsARF18 Causes Growth and Developmental Defects with an Alteration of Auxin Signaling in Rice.
    Sci Rep, 2016. 6: p. 29938
    [PMID:27444058]