PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0980s0030.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family NF-YA
Protein Properties Length: 314aa    MW: 34485.3 Da    PI: 9.5966
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0980s0030.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA95.65.6e-30155210258
               CBFB_NFYA   2 eplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                              p+YVNaKQy++I++RR++Rak+  ekkl ++srkpy+h SRh hA+rRpRg+gGrF
  SapurV1A.0980s0030.1.p 155 GPMYVNAKQYHGIMRRRKSRAKAVLEKKL-TNSRKPYMHYSRHLHAMRRPRGCGGRF 210
                             79***************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005211.7E-33152213IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115235.433153213IPR001289Nuclear transcription factor Y subunit A
PfamPF020459.3E-26156210IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006161.5E-21156178IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006161.5E-21187210IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    Send to blast
MTMKIKEHEG MVNDPIGKFL TVPWWTAFGS QDDTGESCGR LKALPVEQLA IGGEPVTKQA  60
RMSTDQGLDK GKITPFTIFP GDYKTSADGQ KTLQAAISLQ TTLPEYRAHF DLEFGQPVIC  120
TKYPRVDQCY GVFSPFGPQI SGRIMLPMSM TADDGPMYVN AKQYHGIMRR RKSRAKAVLE  180
KKLTNSRKPY MHYSRHLHAM RRPRGCGGRF LNTKELNGGK GTMEAKKAGD FELSQATGSQ  240
NSEVLESGGA TLNSSMEANG GGSILSGSEV TSMYNRGELD LLQINHLGPT FHSFSGMMDR  300
KWVAAADNCR NLK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_A7e-17154215264HAPB protein
4g92_A7e-17154215264HAPB protein
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1167172MRRRKS
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0980s0030.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002322774.20.0nuclear transcription factor Y subunit A-10
RefseqXP_002322775.20.0nuclear transcription factor Y subunit A-10
TrEMBLB9IIJ30.0B9IIJ3_POPTR; Uncharacterized protein
STRINGPOPTR_0016s06860.30.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF37943464
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06510.22e-59nuclear factor Y, subunit A10