PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0980s0020.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family M-type_MADS
Protein Properties Length: 403aa    MW: 43722.3 Da    PI: 8.2139
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0980s0020.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF42.21e-131151343
                            --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS
                  SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43
                            i n+  r+ ++ kRr g+lKK +EL +LC++e+ vii+ ++
  SapurV1A.0980s0020.1.p 11 IVNDAARKASLKKRRDGLLKKVSELTILCGIEAFVIIYCPD 51
                            669999********************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004327.1E-17160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006616.161148IPR002100Transcription factor, MADS-box
CDDcd002661.13E-23285No hitNo description
PRINTSPR004044.2E-6323IPR002100Transcription factor, MADS-box
SuperFamilySSF554554.19E-21394IPR002100Transcription factor, MADS-box
PfamPF003198.6E-131151IPR002100Transcription factor, MADS-box
PRINTSPR004044.2E-62338IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 403 aa     Download sequence    Send to blast
MARKKVKLMW IVNDAARKAS LKKRRDGLLK KVSELTILCG IEAFVIIYCP DDPEPAIWPS  60
RPDVRRLATR FQNIPAMERS KKMMNQESYL KERMGKLNDQ SRKHLKMNRE LEMDDLMQQV  120
YQEQGFDGLD QTQLCCLAWL VAEKMKVIRK RIGYFQQIPP LQDASLPQGP FPDDDGDGDG  180
TGGGSNIFGL RLSRSRITGD ISGGNSFDLR LLPHDNDILR GRISSGGNNF DAGLPVGITM  240
LGCKNSGNSF DPWLSRGLGF NRGGKTSAGN NFDPAGLAQG SDTRSGSAGG NNFDVLWLPH  300
HVKNIGGNSA AVNNVDPWLA ASTGDNNGGE SLGLGLLPGS NFSGSGAGGN PFHGMHRDMN  360
LEIYSSAGGG DLGQLGFFGT SSRDLRLPFD ATKNWLDDNF SP*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1224RKKVKLMWIVNDAARKASLKKRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0980s0020.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2101321e-148AC210132.1 Populus trichocarpa clone POP011-D09, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011042569.11e-143PREDICTED: uncharacterized transmembrane protein DDB_G0289901-like
TrEMBLA0A2K1XBV51e-149A0A2K1XBV5_POPTR; Uncharacterized protein
STRINGPOPTR_0016s06850.11e-149(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF110141938
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40210.19e-34AGAMOUS-like 48