PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0979s0050.3.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family B3
Protein Properties Length: 290aa    MW: 32771.1 Da    PI: 8.2141
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0979s0050.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B362.56.9e-20183276198
                             EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
                      B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                             f+ +l ps+v +  +l +p +fa+++ + + ++   +tle  +g++W v++  + k+g+  l++GW eFv +n+L+egD+++F+l++
  SapurV1A.0979s0050.3.p 183 FQVILRPSYVYRGFLLHIPSSFARTFlNRV-TG--FVTLEVCDGKQWPVRC--SFKDGKAKLGQGWTEFVWENNLEEGDVCIFELIH 264
                             88999******************9995444.34..59999***********..66666677*************************9 PP

                             SSEE..EEEEE- CS
                      B3  87 rsefelvvkvfr 98 
                              +e  ++v +fr
  SapurV1A.0979s0050.3.p 265 AKEIVMKVAIFR 276
                             999989999987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.108.4E-27175276IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.53E-26178281IPR015300DNA-binding pseudobarrel domain
CDDcd100171.65E-25181276No hitNo description
SMARTSM010193.8E-18183278IPR003340B3 DNA binding domain
PfamPF023622.0E-18183276IPR003340B3 DNA binding domain
PROSITE profilePS5086314.833183278IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
MYDLTVSEIK NPCNSISQLQ ESSHDNPCLL PHEKDDGLKK ILGFRPPSLN LLSSLTSKNF  60
NEYVHCNCTQ STYTAGLEKP HGRTDAFNLR EKCQSSRDIG TQFNGEELTS TEDGVGSIIS  120
GTTAKTRGSK RMSENSIQTV KQKSTRVKNT FETLTRRQRA VTPEEKERTI RAAHMFRPDN  180
PFFQVILRPS YVYRGFLLHI PSSFARTFLN RVTGFVTLEV CDGKQWPVRC SFKDGKAKLG  240
QGWTEFVWEN NLEEGDVCIF ELIHAKEIVM KVAIFRVLED AVPPDQLSN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4i1k_A8e-4815127917144B3 domain-containing transcription factor VRN1
4i1k_B8e-4815127917144B3 domain-containing transcription factor VRN1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0979s0050.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024454808.10.0B3 domain-containing transcription factor VRN1 isoform X3
TrEMBLA0A3N7ETM40.0A0A3N7ETM4_POPTR; Uncharacterized protein
STRINGPOPTR_0004s15410.11e-108(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49480.11e-48related to vernalization1 1