PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0979s0040.4.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | B3 | ||||||||
Protein Properties | Length: 209aa MW: 24050.2 Da PI: 9.059 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 62.9 | 5.2e-20 | 113 | 203 | 4 | 98 |
E-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS B3 4 vltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 vl ps+ + ++++lp fae++ g s ++l+ ++g++W v++ yr+++ +++GW eF ++n+L egD+++F+l +++ SapurV1A.0979s0040.4.p 113 VLRPSYLYRGCIMYLPSGFAEKNlnG----LSGFMKLQLPDGKQWPVRCLYRGGR--AKFSQGWYEFTQENNLGEGDVCIFELLKSR 193 7889*******************643....34469999***********666665..5699*********************99988 PP EE..EEEEE- CS B3 89 efelvvkvfr 98 + l+v+vfr SapurV1A.0979s0040.4.p 194 DVVLKVTVFR 203 9889999998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 4.4E-26 | 102 | 203 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 3.27E-26 | 104 | 203 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.10E-25 | 108 | 203 | No hit | No description |
PROSITE profile | PS50863 | 14.043 | 110 | 205 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 5.5E-22 | 110 | 205 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 4.3E-18 | 113 | 203 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 209 aa Download sequence Send to blast |
MRLTKSANVS QVADEWAQNV FAQYNEHKNS QDEVKLYSPD EETPKLKKRG RKRLKIDPNE 60 QQLSSLNEDD GEARFRFYES ASARKRTVTA EERERAMNAA KAYAPDNPYC RVVLRPSYLY 120 RGCIMYLPSG FAEKNLNGLS GFMKLQLPDG KQWPVRCLYR GGRAKFSQGW YEFTQENNLG 180 EGDVCIFELL KSRDVVLKVT VFRVLEDV* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4i1k_A | 9e-76 | 76 | 208 | 15 | 146 | B3 domain-containing transcription factor VRN1 |
4i1k_B | 9e-76 | 76 | 208 | 15 | 146 | B3 domain-containing transcription factor VRN1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the regulation of vernalization (By similarity). Binds to DNA in vitro in a non-sequence-specific manner. XLG2 promotes the DNA binding activity of RTV1 specifically to promoter regions of FT and SOC1 in vivo and thus leads to the activation of floral integrator genes. {ECO:0000250, ECO:0000269|PubMed:22232549}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0979s0040.4.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By cold. {ECO:0000269|PubMed:22232549}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011001170.1 | 1e-143 | PREDICTED: B3 domain-containing transcription factor VRN1-like isoform X2 | ||||
Refseq | XP_011001171.1 | 1e-143 | PREDICTED: B3 domain-containing transcription factor VRN1-like isoform X3 | ||||
Swissprot | Q9XIB5 | 3e-85 | REM19_ARATH; B3 domain-containing protein REM19 | ||||
TrEMBL | A0A2K2AUR8 | 1e-140 | A0A2K2AUR8_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0004s15400.1 | 1e-141 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G49480.1 | 9e-81 | related to vernalization1 1 |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0979s0040.4.p |
Publications ? help Back to Top | |||
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