PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0978s0100.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family ZF-HD
Protein Properties Length: 339aa    MW: 37520.1 Da    PI: 9.0538
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0978s0100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer98.26.3e-31116171359
             ZF-HD_dimer   3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59 
                             ++rY eClkNhAas+Ggh++DGCgEfmp  geegt +a+kCaAC+CHRnFH+re + 
  SapurV1A.0978s0100.1.p 116 STRYTECLKNHAASMGGHVLDGCGEFMPG-GEEGTLEAFKCAACECHRNFHKREIDG 171
                             679*************************9.999********************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047709.1E-29117169IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015662.4E-28118169IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257746.0E-21119172IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152326.979119168IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3DG3DSA:1.10.10.601.7E-29261334IPR009057Homeodomain-like
SuperFamilySSF466891.03E-18265333IPR009057Homeodomain-like
TIGRFAMsTIGR015655.1E-27272329IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    Send to blast
MEVRGQDKGI VMPRSLIYNP TDNRDSSSKV PNSAPPRKVH PHTATVSVPS LTPEHHSLYD  60
QQQQEQAQKP TRDLDLTPDP VQAATPIATT GAINTSQTPS RSISRSPPAK SASSASTRYT  120
ECLKNHAASM GGHVLDGCGE FMPGGEEGTL EAFKCAACEC HRNFHKREID GEPPQCVANS  180
TLYKISNGHR DILPQPPHLV TSCAPRQPNY LHQHHRYHHG TLSAYTAPIA PMIMSFRGGD  240
GGGAAAESSS EDLNMYQSDL QGQASVQPSM SRKRFRTKFS QDQKDKMTEF AEKLGWRIQK  300
QDDQELQQFC SQVGVKRKVF KVWMHNNKQA MKKKQIIH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A6e-222713301675ZF-HD homeobox family protein
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00268DAPTransfer from AT2G18350Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0978s0100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006380765.10.0zinc-finger homeodomain protein 6
RefseqXP_024461197.10.0zinc-finger homeodomain protein 6
TrEMBLU5GAU40.0U5GAU4_POPTR; Uncharacterized protein
STRINGPOPTR_0007s12970.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20634253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75240.14e-57homeobox protein 33