PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0978s0050.5.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family bHLH
Protein Properties Length: 368aa    MW: 41115.9 Da    PI: 4.8421
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0978s0050.5.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH24.26e-08223270455
                             HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                     HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                             +h+  Er RR++i +++  L++l+P +    +k    a +L + ++Y++sLq
  SapurV1A.0978s0050.5.p 223 SHSLSERARREKISKKMKCLQDLVPGC----NKIAGRAGMLDEIINYVQSLQ 270
                             799************************....899*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.63E-7217274No hitNo description
SuperFamilySSF474597.46E-15217286IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.227219269IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.2E-16219285IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.2E-5223270IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.9E-8225275IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 368 aa     Download sequence    Send to blast
MFCMDMTVLE RQQARFKWLL QQQQENNHVS QYDPLELCSV PTDLFHGFFD HESMNGDRID  60
WKKQPEIYLG NNDLPNYGGF SLNGTEFVAS NKMDFGESEV TARPLEFDHC LSRTSSCQTG  120
VVEAAKIERV VSVNVAGEDV TLMENKESNL GRRDNSNKRK AEFIAAEECD DKIQEVVEDE  180
SKAKEKGSTE ISADSSMENQ KTPALPNTDY IHVRARRGQA TDSHSLSERA RREKISKKMK  240
CLQDLVPGCN KIAGRAGMLD EIINYVQSLQ SQVEFLSMKI AAVNRTPDNV NFSGEELPAY  300
IGSFPAATMS STIANFPAAL TDTFQLVPEK VTSSSAFIHG VCLDHSLDHV RPFWDADSQN  360
LQNLGFH*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0978s0050.5.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002310242.20.0transcription factor HBI1
TrEMBLB9HF170.0B9HF17_POPTR; BHLH family protein
STRINGPOPTR_0007s13020.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G18300.28e-50bHLH family protein