PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0975s0090.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family C2H2
Protein Properties Length: 236aa    MW: 26152 Da    PI: 6.3855
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0975s0090.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.40.000117395123
                            EEETTTTEEESSHHHHHHHHHHT CS
                 zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                            y+C+ C + F++   L  H+++H
  SapurV1A.0975s0090.1.p 73 YTCTFCRREFRSAQALGGHMNVH 95
                            9********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.59E-670100No hitNo description
PfamPF139121.8E-57396IPR007087Zinc finger, C2H2
SMARTSM003550.00667395IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.15773100IPR007087Zinc finger, C2H2
PROSITE patternPS0002807595IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    Send to blast
MAAEIGLLSM TQLQNLPQSH QNQYQHQQNP SETPSFWMWN PKQTQEDDDS WEVRAFAEDT  60
GNINGTTWPP RSYTCTFCRR EFRSAQALGG HMNVHRRDRA RLHQTQPGSI NPRSSTSGSS  120
SSTFIIPTQE FPPNAGGLCL LYQLPNPNGV FSTPTNMNAC AIDSPSTLFS ITPYPHNSLT  180
GPSLNFPAAP PEINTPHCYS YIKAESSAST DYSNGIKNKK CKELASEELD LELRL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A4e-136895229superman protein
2l1o_A4e-136895229Transcriptional regulator SUPERMAN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0975s0090.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006385648.11e-148transcriptional regulator SUPERMAN
TrEMBLB9N2N51e-146B9N2N5_POPTR; Uncharacterized protein
STRINGPOPTR_0003s09000.11e-147(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF35253155
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17810.19e-45C2H2 family protein