PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0974s0140.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | B3 | ||||||||
Protein Properties | Length: 358aa MW: 40222 Da PI: 6.6301 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 101.9 | 3.7e-32 | 106 | 208 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83 f+k ltpsdv+k++rlv+pk++ae++ g + ++ l++edesg+ W+++++y+++s++yvltkGW+++vk+++L++gD v+F+ SapurV1A.0974s0140.2.p 106 FEKPLTPSDVGKLNRLVIPKQHAEKYfplsGASVDKGLLLSFEDESGKYWRFRYSYWNSSQSYVLTKGWSRYVKEKQLDAGDAVLFE 192 99***************************9666668889************************************************ PP E-SSSEE..EEEEE-S CS B3 84 ldgrsefelvvkvfrk 99 ++++++ +l+++++r+ SapurV1A.0974s0140.2.p 193 RHRTDSDRLFIGWRRR 208 98889999******97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 8.6E-43 | 101 | 219 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 9.42E-31 | 102 | 211 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 4.60E-28 | 104 | 198 | No hit | No description |
Pfam | PF02362 | 1.5E-29 | 106 | 208 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 6.1E-25 | 106 | 209 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 14.297 | 106 | 209 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 358 aa Download sequence Send to blast |
MSINEFSTDI QQTLIWWAQQ SIMEPNPNTS SSKPNRPPNS SWRPHLYHHY QPSAMFPPQN 60 PNLNFNLNEE DDEEQDQQQQ QQQQPHDEAQ REHEQEGLVL DKEPMFEKPL TPSDVGKLNR 120 LVIPKQHAEK YFPLSGASVD KGLLLSFEDE SGKYWRFRYS YWNSSQSYVL TKGWSRYVKE 180 KQLDAGDAVL FERHRTDSDR LFIGWRRRGE MSGSSSASNS GVMVQGSGGG ASRRGLHTSS 240 SSSSGPNYHL SSCNSLHGLG SPNVPFQSDC LHAAVTAAQN QTAQLGNSRR LRLFGVNLEC 300 QLLDEAEPST SGGSSLSSLQ GPVHQQLYSH QSDYSTHSQM DSTFSSRDVN QMRNRRG* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5os9_A | 2e-50 | 101 | 208 | 3 | 113 | B3 domain-containing transcription factor NGA1 |
5os9_B | 2e-50 | 101 | 208 | 3 | 113 | B3 domain-containing transcription factor NGA1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0974s0140.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011004667.1 | 1e-177 | PREDICTED: B3 domain-containing protein At2g36080-like | ||||
Swissprot | Q9FNI3 | 2e-71 | Y5625_ARATH; B3 domain-containing protein At5g06250 | ||||
TrEMBL | A0A3N7G2N7 | 1e-170 | A0A3N7G2N7_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0006s22460.1 | 1e-150 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06250.2 | 3e-59 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0974s0140.2.p |