PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0974s0140.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family B3
Protein Properties Length: 428aa    MW: 48157.4 Da    PI: 7.4762
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0974s0140.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3101.45.1e-32106208199
                             EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS
                      B3   1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83 
                             f+k ltpsdv+k++rlv+pk++ae++    g +  ++  l++edesg+ W+++++y+++s++yvltkGW+++vk+++L++gD v+F+
  SapurV1A.0974s0140.1.p 106 FEKPLTPSDVGKLNRLVIPKQHAEKYfplsGASVDKGLLLSFEDESGKYWRFRYSYWNSSQSYVLTKGWSRYVKEKQLDAGDAVLFE 192
                             99***************************9666668889************************************************ PP

                             E-SSSEE..EEEEE-S CS
                      B3  84 ldgrsefelvvkvfrk 99 
                             ++++++ +l+++++r+
  SapurV1A.0974s0140.1.p 193 RHRTDSDRLFIGWRRR 208
                             98889999******97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.2E-42101219IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.31E-30102211IPR015300DNA-binding pseudobarrel domain
CDDcd100179.18E-28104198No hitNo description
SMARTSM010196.1E-25106209IPR003340B3 DNA binding domain
PfamPF023622.1E-29106208IPR003340B3 DNA binding domain
PROSITE profilePS5086314.297106209IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 428 aa     Download sequence    Send to blast
MSINEFSTDI QQTLIWWAQQ SIMEPNPNTS SSKPNRPPNS SWRPHLYHHY QPSAMFPPQN  60
PNLNFNLNEE DDEEQDQQQQ QQQQPHDEAQ REHEQEGLVL DKEPMFEKPL TPSDVGKLNR  120
LVIPKQHAEK YFPLSGASVD KGLLLSFEDE SGKYWRFRYS YWNSSQSYVL TKGWSRYVKE  180
KQLDAGDAVL FERHRTDSDR LFIGWRRRGE MSGSSSASNS GVMVQGSGGG ASRRGLHTSS  240
SSSSGPNYHL SSCNSLHGLG SPNVPFQSDC LHAAVTAAQN QTAQLGNSRR LRLFGVNLEC  300
QLLDEAEPST SGGSSLSSLQ GPVHQQLYSH QSDYSTHSQM HFLLPRCQPD EKSPRIRSVD  360
VTSLDLTSLK NPTRTWKLDM EGQEIIKNIC SIVLVFYILR RKYPSISMGA HFKPGSGGER  420
RKQVGGY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A1e-491012083113B3 domain-containing transcription factor NGA1
5os9_B1e-491012083113B3 domain-containing transcription factor NGA1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0974s0140.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011004667.11e-166PREDICTED: B3 domain-containing protein At2g36080-like
SwissprotQ9FNI32e-70Y5625_ARATH; B3 domain-containing protein At5g06250
TrEMBLA0A3N7G2N71e-159A0A3N7G2N7_POPTR; Uncharacterized protein
STRINGPOPTR_0006s22460.11e-141(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF57393452
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06250.22e-58B3 family protein