PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0958s0180.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family bHLH
Protein Properties Length: 348aa    MW: 37727.3 Da    PI: 8.4968
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0958s0180.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.81.6e-12150196354
                             HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                     HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                             ++h+e+E++RR+riN  +++Lr+l+P        K++Ka+ L +++ ++k+L
  SapurV1A.0958s0180.1.p 150 KNHSEAEKKRRARINAHLDTLRSLVPGT-----SKMDKASLLAEVITHLKEL 196
                             58*************************7.....6****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.259147196IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.85E-14149205IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.15E-13150199No hitNo description
PfamPF000102.0E-10150196IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.0E-14151221IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.0E-12153202IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 348 aa     Download sequence    Send to blast
MLSDHLLKVS IYLYFVPLTF SFLFLRINSQ SNDHNLKTQT FVFSALIEVT LIGTQTEITP  60
IPFPSFFVAA AVVILAMEAC SWNSTRVQVS GFEGMSGGSL VNSGLQAKTR AGSSSTSALV  120
LDNERGELVE ATVRMERKVV SAERSIAALK NHSEAEKKRR ARINAHLDTL RSLVPGTSKM  180
DKASLLAEVI THLKELKIQA TEASEGLLMP LDIDELRVEQ KEGGLHGGPY VITASICCDC  240
KPGVLSDLRQ ELDALHLIIM RAEIATLEGR MRNVFVMSSC NEGGGGGGGG DTKAHQFRGG  300
SIHQALRSIL DRFSASQEFS LKSTVSNKRR RVGLFKPSLS SSSGDLW*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1327331KRRRV
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0958s0180.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002325576.11e-158transcription factor bHLH30
TrEMBLA0A3N7GC421e-157A0A3N7GC42_POPTR; Uncharacterized protein
STRINGPOPTR_0019s11870.11e-157(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF106852538
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68810.12e-30bHLH family protein