PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0957s0060.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | SRS | ||||||||
Protein Properties | Length: 314aa MW: 34038.4 Da PI: 8.1544 | ||||||||
Description | SRS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF702 | 222.5 | 8.4e-69 | 94 | 244 | 4 | 153 |
DUF702 4 gtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa.aeaaskrkrelkskkqsalsst 89 g+++CqdCGnq+kkdC h+RCRtCCksrgf C+thvkstWv+aakrrerqqql+a+++++++++ ++ +++++l++++ a+s + SapurV1A.0957s0060.1.p 94 GGMNCQDCGNQSKKDCPHMRCRTCCKSRGFPCQTHVKSTWVSAAKRRERQQQLTALQQHNQQEQqQQFLGENPKRLRENHGGASSLA 180 789***************************************************999988877733334455555555555555555 PP DUF702 90 klssaeskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGle 153 + a s++ le + +P+e++sea+frcv+vs++dd++++laYqtav+igGhvf+GiLydqG++ SapurV1A.0957s0060.1.p 181 CTRLAASTSGLELTAFPPELNSEAIFRCVKVSAMDDADDQLAYQTAVNIGGHVFRGILYDQGPD 244 555566667899999***********************************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF05142 | 1.2E-65 | 95 | 244 | IPR007818 | Protein of unknown function DUF702 |
TIGRFAMs | TIGR01623 | 2.5E-25 | 97 | 139 | IPR006510 | Zinc finger, lateral root primordium type 1 |
TIGRFAMs | TIGR01624 | 4.5E-25 | 195 | 243 | IPR006511 | Lateral Root Primordium type 1, C-terminal |
Sequence ? help Back to Top |
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Protein Sequence Length: 314 aa Download sequence Send to blast |
MAGWFYLGGG EGPSRKQDQE KEDNNSSFVL HRPSNEEIYN NKGFELWPQY YHQQQNMNSF 60 SFGVGPSRRS SSDDHSSRSG FSLTRQGGGG GLRGGMNCQD CGNQSKKDCP HMRCRTCCKS 120 RGFPCQTHVK STWVSAAKRR ERQQQLTALQ QHNQQEQQQQ FLGENPKRLR ENHGGASSLA 180 CTRLAASTSG LELTAFPPEL NSEAIFRCVK VSAMDDADDQ LAYQTAVNIG GHVFRGILYD 240 QGPDGRYTST GGESSSSGAQ QLLMAAAATS TTGTTTNTSN PSAGNTLLDP SSLYPAPLNA 300 FIAGTQFFAP PRS* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). {ECO:0000269|PubMed:16740146}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0957s0060.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024456842.1 | 1e-180 | protein SHI RELATED SEQUENCE 5 | ||||
Swissprot | Q9LQZ5 | 2e-93 | SRS5_ARATH; Protein SHI RELATED SEQUENCE 5 | ||||
TrEMBL | A0A2K2ALD7 | 1e-178 | A0A2K2ALD7_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0005s25560.1 | 1e-160 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF882 | 34 | 125 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75520.1 | 8e-79 | SHI-related sequence 5 |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0957s0060.1.p |
Publications ? help Back to Top | |||
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