PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0956s0040.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family C2H2
Protein Properties Length: 294aa    MW: 31925.4 Da    PI: 7.9263
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0956s0040.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.80.00018109131123
                             EEETTTTEEESSHHHHHHHHHHT CS
                 zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                             ++C+ C++ Fs++  L  H++ H
  SapurV1A.0956s0040.1.p 109 FSCNFCKREFSTSQALGGHQNAH 131
                             89******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.44E-6106136No hitNo description
Gene3DG3DSA:3.30.160.604.4E-4106135IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.552109136IPR007087Zinc finger, C2H2
PROSITE patternPS000280111131IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    Send to blast
MESIGTERCP SEGSSISATS EGSPHRDGGD LDQTEMVNTN MKEKVVQGSE AALLPKSSAR  60
VLLDLKLSRD NSTRGSKLEF NLFSPMNVIS SHAKESTDET LKQNNSRVFS CNFCKREFST  120
SQALGGHQNA HKQERTLAKR RQEMDVGDLG QLLPYYPYSS LSANPYYGSL NRSIGVRLDS  180
LVHKTSPPYS CTSPIGLRHG AHGGWSRQTM MNTQPSIGRL TTESLNAFCG GFGISSSSSS  240
PRFEDNLLRN LGASPSSNFA AINNPPGSDH IQQTDRPKTY QTDESGLDLS LKL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0956s0040.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011020213.11e-172PREDICTED: zinc finger protein 3-like
TrEMBLA0A2K1ZXT91e-168A0A2K1ZXT9_POPTR; Uncharacterized protein
STRINGPOPTR_0025s00650.11e-152(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18223074
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G01860.17e-23C2H2 family protein