PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0937s0140.9.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family bHLH
Protein Properties Length: 401aa    MW: 44127.8 Da    PI: 6.2816
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0937s0140.9.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH49.86.1e-16320366455
                             HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                     HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                              hn  ErrRRdriN+++  L+el+P +      K +Ka++L +A+eY+ksLq
  SapurV1A.0937s0140.9.p 320 VHNLSERRRRDRINEKMRALQELIPRC-----NKSDKASMLDEAIEYLKSLQ 366
                             6*************************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.105.5E-20313371IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.31E-19313381IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.044316365IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.51E-15319370No hitNo description
PfamPF000102.2E-13320366IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.9E-17322371IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006783Biological Processheme biosynthetic process
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0009959Biological Processnegative gravitropism
GO:0010100Biological Processnegative regulation of photomorphogenesis
GO:0010161Biological Processred light signaling pathway
GO:0010187Biological Processnegative regulation of seed germination
GO:0015995Biological Processchlorophyll biosynthetic process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0010313Molecular Functionphytochrome binding
GO:0042802Molecular Functionidentical protein binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 401 aa     Download sequence    Send to blast
MNPYAPDFEM DDDYSLPPPP STLNRPRKPA MQEEEIMELL WQNGQVVMHS QRSQKKSSSP  60
PSKLDDAVLP ADQLQGTKEI RSSHDQHQQH HLFMQEDEMA SWLHYPLNDT NFDHEFCADF  120
LYTPTASTAS ITREAAVTNA AASPVRGLTQ RTEPRSCLAV SAPRPPIAPV RRAEVMQNFA  180
HFSRHRAANV SEPGPSNSRS VVRESTVVDS CETPKARTSE TAFARSADNS VAVAGKGSSA  240
PSRKRKMTAT PCEMTSTSSP GCSSASAEPP ALMAPVEDRK RKGREEEAEC HSEDAEFESA  300
DAKKQTRGST SSKRSRAAEV HNLSERRRRD RINEKMRALQ ELIPRCNKSD KASMLDEAIE  360
YLKSLQLQVQ HGPNDVSWLP ELHATNGNGD GDGDGDGDGH *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1241246SRKRKM
2324329ERRRRD
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00074ChIP-chipTransfer from AT2G20180Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0937s0140.9.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC2976950.0KC297695.1 Populus tomentosa PIL gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024451358.10.0transcription factor PIF1 isoform X3
TrEMBLA0A3N7EKR40.0A0A3N7EKR4_POPTR; Uncharacterized protein
TrEMBLA0A3N7G0M50.0A0A3N7G0M5_POPTR; Uncharacterized protein
STRINGPOPTR_0002s25410.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20180.31e-67phytochrome interacting factor 3-like 5