PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0937s0140.7.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | bHLH | ||||||||
Protein Properties | Length: 491aa MW: 54154.4 Da PI: 8.484 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 49.4 | 8e-16 | 293 | 339 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn ErrRRdriN+++ L+el+P + K +Ka++L +A+eY+ksLq SapurV1A.0937s0140.7.p 293 VHNLSERRRRDRINEKMRALQELIPRC-----NKSDKASMLDEAIEYLKSLQ 339 6*************************8.....6******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 7.07E-21 | 286 | 355 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 18.044 | 289 | 338 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 4.46E-16 | 292 | 343 | No hit | No description |
Pfam | PF00010 | 2.9E-13 | 293 | 339 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 6.6E-21 | 293 | 350 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.2E-17 | 295 | 344 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0006783 | Biological Process | heme biosynthetic process | ||||
GO:0009740 | Biological Process | gibberellic acid mediated signaling pathway | ||||
GO:0009959 | Biological Process | negative gravitropism | ||||
GO:0010100 | Biological Process | negative regulation of photomorphogenesis | ||||
GO:0010161 | Biological Process | red light signaling pathway | ||||
GO:0010187 | Biological Process | negative regulation of seed germination | ||||
GO:0015995 | Biological Process | chlorophyll biosynthetic process | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0010313 | Molecular Function | phytochrome binding | ||||
GO:0042802 | Molecular Function | identical protein binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 491 aa Download sequence Send to blast |
MKCRQEEEIM ELLWQNGQVV MHSQRSQKKS SSPPSKLDDA VLPADQLQGT KEIRSSHDQH 60 QQHHLFMQED EMASWLHYPL NDTNFDHEFC ADFLYTPTAS TASITREAAV TNAAASPVRG 120 LTQRTEPRSC LAVSAPRPPI APVRRAEVMQ NFAHFSRHRA ANVSEPGPSN SRSVVRESTV 180 VDSCETPKAR TSETAFARSA DNSVAVAGKG SSAPSRKRKM TATPCEMTST SSPGCSSASA 240 EPPALMAPVE DRKRKGREEE AECHSEDAEF ESADAKKQTR GSTSSKRSRA AEVHNLSERR 300 RRDRINEKMR ALQELIPRCN KSDKASMLDE AIEYLKSLQL QVQMMSMGCS MVPMMFPGFQ 360 NYMPPMGMGM GMGMGMGMGI EMGLSRPVMP FPNVLASAPS ATPAAAAHLG PSRFPVPPFH 420 VPPIPAPDPS RVHPANQVYP MLGSPGQQNP NQPRVSNFVD PYQHYLGLHQ MHIPGVPQVY 480 IYKYKHTWSF * |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 214 | 219 | SRKRKM |
2 | 297 | 302 | ERRRRD |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00074 | ChIP-chip | Transfer from AT2G20180 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0937s0140.7.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KC297695 | 0.0 | KC297695.1 Populus tomentosa PIL gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024451358.1 | 0.0 | transcription factor PIF1 isoform X3 | ||||
Refseq | XP_024451359.1 | 0.0 | transcription factor PIF1 isoform X4 | ||||
TrEMBL | A0A2K2BPB4 | 0.0 | A0A2K2BPB4_POPTR; Uncharacterized protein | ||||
TrEMBL | A0A3N7EKR4 | 0.0 | A0A3N7EKR4_POPTR; Uncharacterized protein | ||||
TrEMBL | A0A3N7G0M5 | 0.0 | A0A3N7G0M5_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0002s25410.1 | 0.0 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G20180.3 | 6e-69 | phytochrome interacting factor 3-like 5 |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0937s0140.7.p |