PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0933s0060.5.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family WRKY
Protein Properties Length: 322aa    MW: 36055.8 Da    PI: 8.8489
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0933s0060.5.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY107.75.9e-3481137259
                             --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                    WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                             +DgynWrKYGqK+vkgsefprsYY+Ct + Cpvkkkvers  d++v+ei+Y+g+Hnhe
  SapurV1A.0933s0060.5.p  81 EDGYNWRKYGQKQVKGSEFPRSYYKCTLPICPVKKKVERSL-DGQVTEIIYKGQHNHE 137
                             8****************************************.***************8 PP
2WRKY103.89.2e-33251309159
                             ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                    WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                             ldDgy+WrKYGqK+vkg+++prsYY+Ct++gC+v+k+ver+a dp++v++tYe +Hnhe
  SapurV1A.0933s0060.5.p 251 LDDGYRWRKYGQKVVKGNHYPRSYYKCTTPGCKVRKHVERAAADPRAVITTYEAKHNHE 309
                             59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.9E-2970139IPR003657WRKY domain
PROSITE profilePS5081122.99775139IPR003657WRKY domain
SuperFamilySSF1182902.62E-2578139IPR003657WRKY domain
SMARTSM007742.9E-3680138IPR003657WRKY domain
PfamPF031062.0E-2581137IPR003657WRKY domain
Gene3DG3DSA:2.20.25.806.6E-36236311IPR003657WRKY domain
SuperFamilySSF1182908.5E-29243311IPR003657WRKY domain
PROSITE profilePS5081136.059246311IPR003657WRKY domain
SMARTSM007742.5E-37251310IPR003657WRKY domain
PfamPF031066.8E-25252309IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    Send to blast
MIHQQALAQA AQADSNMHVQ QAPAMSSTQF LTFINNPAAH QQQQMVGSVT DSRVTVQEPS  60
DFPRSYKRSE SSSLAVDKPT EDGYNWRKYG QKQVKGSEFP RSYYKCTLPI CPVKKKVERS  120
LDGQVTEIIY KGQHNHEPPR PDKRGKDTGR INGSSNSQGD CEIATQFQSG NVRKMGDRKD  180
QESSQATPEH VSGMSDYEEV SDTETGGQID EDEPGPKRRT TEVRVTEPAS SHKTVTESRI  240
VVQTTSEVDL LDDGYRWRKY GQKVVKGNHY PRSYYKCTTP GCKVRKHVER AAADPRAVIT  300
TYEAKHNHEL PAAKNRSHNN S*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A6e-4281312878Probable WRKY transcription factor 4
2lex_A6e-4281312878Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0933s0060.5.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid and during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011017961.10.0PREDICTED: probable WRKY transcription factor 3
SwissprotQ9ZQ701e-119WRKY3_ARATH; Probable WRKY transcription factor 3
TrEMBLB9HIB51e-174B9HIB5_POPTR; Uncharacterized protein
STRINGPOPTR_0008s09140.11e-175(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03340.11e-117WRKY DNA-binding protein 3
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Aamir M, et al.
    Structural and Functional Insights into WRKY3 and WRKY4 Transcription Factors to Unravel the WRKY-DNA (W-Box) Complex Interaction in Tomato (Solanum lycopersicum L.). A Computational Approach.
    Front Plant Sci, 2017. 8: p. 819
    [PMID:28611792]