PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0933s0060.4.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family WRKY
Protein Properties Length: 424aa    MW: 46554.8 Da    PI: 7.6043
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0933s0060.4.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY107.19e-34224280259
                             --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                    WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                             +DgynWrKYGqK+vkgsefprsYY+Ct + Cpvkkkvers  d++v+ei+Y+g+Hnhe
  SapurV1A.0933s0060.4.p 224 EDGYNWRKYGQKQVKGSEFPRSYYKCTLPICPVKKKVERSL-DGQVTEIIYKGQHNHE 280
                             8****************************************.***************8 PP
2WRKY33.31e-10394415122
                             ---SS-EEEEEEE--TT-SS-E CS
                    WRKY   1 ldDgynWrKYGqKevkgsefpr 22 
                             ldDgy+WrKYGqK+vkg+++pr
  SapurV1A.0933s0060.4.p 394 LDDGYRWRKYGQKVVKGNHYPR 415
                             59*******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.0E-29213282IPR003657WRKY domain
PROSITE profilePS5081122.997218282IPR003657WRKY domain
SuperFamilySSF1182904.05E-25222282IPR003657WRKY domain
SMARTSM007742.9E-36223281IPR003657WRKY domain
PfamPF031063.0E-25224280IPR003657WRKY domain
Gene3DG3DSA:2.20.25.807.9E-13379415IPR003657WRKY domain
SuperFamilySSF1182901.14E-9386416IPR003657WRKY domain
PROSITE profilePS5081114.607389423IPR003657WRKY domain
SMARTSM007740.0031394420IPR003657WRKY domain
PfamPF031061.0E-6395416IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 424 aa     Download sequence    Send to blast
MYNQMAKNEK EQQQPKQQEP SSPSKPVSSR PINITLPPRS FTETFLSSGP PGTSGFSPGP  60
MTLLSGFFPG SDDCKSFSQL LSGTMASPNF KPADDKSPAG DFSRPGKLSM VPPSPMFTMP  120
LGLSPVALPD SSGFGLFSPE GFGMIHQQAL AQAAQADSNM HVQQAPAMSS TQFLTFINNP  180
AAHQQQQMVG SVTDSRVTVQ EPSDFPRSYK RSESSSLAVD KPTEDGYNWR KYGQKQVKGS  240
EFPRSYYKCT LPICPVKKKV ERSLDGQVTE IIYKGQHNHE PPRPDKRGKD TGRINGSSNS  300
QGDCEIATQF QSGNVRKMGD RKDQESSQAT PEHVSGMSDY EEVSDTETGG QIDEDEPGPK  360
RRTTEVRVTE PASSHKTVTE SRIVVQTTSE VDLLDDGYRW RKYGQKVVKG NHYPRWSLNS  420
LTL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A3e-172232821474WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Has a positive role in resistance to necrotrophic pathogens (e.g. Botrytis cinerea), but a negative effect on plant resistance to biotrophic pathogens (e.g. Pseudomonas syringae). {ECO:0000269|PubMed:18570649, ECO:0000269|PubMed:22219184}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0933s0060.4.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By biotic and abiotic stresses such as pathogen infection (e.g. Botrytis cinerea and Pseudomonas syringae), salicylic acid (SA), jasmonic acid (JA), ethylene (ACC), liquid infiltration or spraying, and strongly during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756, ECO:0000269|PubMed:18570649}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011017961.10.0PREDICTED: probable WRKY transcription factor 3
SwissprotQ9XI901e-115WRKY4_ARATH; Probable WRKY transcription factor 4
TrEMBLB9HIB50.0B9HIB5_POPTR; Uncharacterized protein
STRINGPOPTR_0008s09140.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03340.11e-102WRKY DNA-binding protein 3
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Aamir M, et al.
    Structural and Functional Insights into WRKY3 and WRKY4 Transcription Factors to Unravel the WRKY-DNA (W-Box) Complex Interaction in Tomato (Solanum lycopersicum L.). A Computational Approach.
    Front Plant Sci, 2017. 8: p. 819
    [PMID:28611792]