PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0923s0130.3.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | bZIP | ||||||||
Protein Properties | Length: 255aa MW: 28112.4 Da PI: 6.1744 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 31.8 | 3e-10 | 88 | 134 | 5 | 51 |
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkelee 51 k +r NReA r++R++Kka+ + Le++vk L a N++L k+l+ SapurV1A.0923s0130.3.p 88 KSKKRPLGNREAVRKYREKKKAKAASLEDEVKHLRALNQQLLKRLQG 134 77889999**********************************99974 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.20.5.170 | 2.2E-13 | 82 | 152 | No hit | No description |
SMART | SM00338 | 6.0E-10 | 83 | 151 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 9.278 | 86 | 133 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF07716 | 9.6E-15 | 86 | 141 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 1.57E-7 | 88 | 134 | No hit | No description |
CDD | cd14686 | 6.20E-12 | 90 | 143 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 255 aa Download sequence Send to blast |
MDDGELDYSN QEFFLSPNMD DLPSSCSYGL LDELLKDTPH ACTHTHTCNP PGPDNPHTHV 60 CFHAHTKLLP SSEDKVESED TAESIEKKSK KRPLGNREAV RKYREKKKAK AASLEDEVKH 120 LRALNQQLLK RLQGQAALEA EVARLKCLLV DIRGRIEGEI GSFPYQKSAN NVNLTNFPGA 180 LVMNPCNIRC DDQVYCQHPG LDGKGETLNG QGFNICEFEN LQCMEHQNSG NVEMNGNSSS 240 ANKRKGGACE ATVS* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in the response to zinc ion deficiency. Binds to the consensus sequence 5'-[AG]TGTCGACA[CT]-3' also called zinc deficiency response element (ZDRE). The ZDRE sequence is conserved in the plant kingdom and present in the promoters of genes that constitute the primary response to zinc deficiency, comprising additional ZIP metal transporter genes (PubMed:20479230, PubMed:26306426). Required for zinc accumulation in roots. Mediates the expression of the zinc transporters ZIP3, ZIP4, ZIP5 and ZIP9 during growth in zinc-deficient conditions. ZIP9 transporter is involved in zinc uptake in roots (PubMed:26306426). {ECO:0000269|PubMed:20479230, ECO:0000269|PubMed:26306426}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0923s0130.3.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by zinc deficiency. {ECO:0000269|PubMed:20479230}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC209268 | 0.0 | AC209268.1 Populus trichocarpa clone ACSB209-O03, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024464706.1 | 1e-176 | basic leucine zipper 23 | ||||
Refseq | XP_024464707.1 | 1e-176 | basic leucine zipper 23 | ||||
Refseq | XP_024464708.1 | 1e-176 | basic leucine zipper 23 | ||||
Refseq | XP_024464709.1 | 1e-176 | basic leucine zipper 23 | ||||
Swissprot | Q8VY76 | 1e-101 | BZP19_ARATH; Basic leucine zipper 19 | ||||
TrEMBL | B9HR58 | 1e-174 | B9HR58_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0009s13730.1 | 1e-175 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G35040.1 | 8e-98 | bZIP family protein |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0923s0130.3.p |
Publications ? help Back to Top | |||
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