PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0914s0080.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family B3
Protein Properties Length: 919aa    MW: 99990.4 Da    PI: 6.7652
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0914s0080.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B358.31.4e-18330430199
                             EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS
                      B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFk 83 
                             f+kvl+ sd+++ grlvlpk +ae++   ++++e+  l+++d +g++W +++++  +++s++yvl+ G     ++ +L++gD+v+F+
  SapurV1A.0914s0080.1.p 330 FEKVLSASDAGRIGRLVLPKACAEAYfpPISQPEGLPLRIQDVKGKEWVFQFRFwpNNNSRMYVLE-GVTPCIQSMKLQAGDTVTFS 415
                             99**************************555567778***************9989999999***9.******************** PP

                             E-SSSEE..EEEEE-S CS
                      B3  84 ldgrsefelvvkvfrk 99 
                             +++  e++lv++++++
  SapurV1A.0914s0080.1.p 416 RMD-PEGKLVMGFRKA 430
                             876.777788877765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.8E-30324437IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.53E-20327430IPR015300DNA-binding pseudobarrel domain
CDDcd100173.72E-23328429No hitNo description
PROSITE profilePS5086311.18330431IPR003340B3 DNA binding domain
SMARTSM010192.4E-21330431IPR003340B3 DNA binding domain
PfamPF023624.3E-16330430IPR003340B3 DNA binding domain
PROSITE profilePS5105013.729591641IPR011124Zinc finger, CW-type
PfamPF074961.1E-10596638IPR011124Zinc finger, CW-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 919 aa     Download sequence    Send to blast
MASSSLSMKS CMNATCGVST SNSGVWKKGW ALRSGDFAIL CDNCGSAYEQ SVFCEVFHSK  60
DSGWRECTSC SKRLHCGCIA SRSLLELLDG GGVNCTSCSG SAGTGSMNVD KTPNGFGKPK  120
VDNNGELQSA PANGHLAAET KLMQLGNCID GIGTRSLLQL QSDEMNGSYR KMKQEDILPP  180
VGEIASTIFS NFNQASNASC QTAKPEIHRT VTAAKDLYES LAQTNLSMSL GSSLGNQNPF  240
PGGVVDERVL SKASSPLQQG PRSRHLLPKP PNLALSMDAN AGMVSQIRVA RPPAEGRGRN  300
QLLPRYWPRI TDQELQQISG DPNSTIVPLF EKVLSASDAG RIGRLVLPKA CAEAYFPPIS  360
QPEGLPLRIQ DVKGKEWVFQ FRFWPNNNSR MYVLEGVTPC IQSMKLQAGD TVTFSRMDPE  420
GKLVMGFRKA SNSIAMQDTQ PSAMPNGVHS SESYFSGVFE NLPIISGYSG LLQSLKGSTD  480
THFSALHSAS GDISWHKSDK QEDRTRDGLL LPSLLVPERK RTRNIGSKSK RLLIDSLDAF  540
ELKLTWEEAQ DLLRPAPSVK PSIVTIEDHD FEEYEEPPVF GKRSIFIVRS IGGQEQWAQC  600
DSCSKWRRLP VDALLPPKWT CVDNTWDQSR CSCSAPDELA PRELENLLRL NKDFKKRKMS  660
SSHQPTQEHE SSGLDALANA AILGDVGEQS ATAAAVATTT KHPRHRPGCS CIVCIQPPSG  720
KGKHKPTCTC NVCMTVKRRF KTLMMRKKKR QSEREAEIAQ KTQQMAGPKD EAEVESSSKL  780
ASIPRDPSDN EARSGNELES KSQSNNLSNK LADSGKGHLD LNCHPDREED SQAGLARMSM  840
TSFLQVASLP LDTYLKQNGL ASLSEQQASS ASHAPPQTEE NEGIIKDDCQ PASAAPEQES  900
GGEENDEPGP DQSQNDPV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9a_A2e-693084372131B3 domain-containing transcription repressor VAL1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1736747KRRFKTLMMRKK
2736749KRRFKTLMMRKKKR
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0914s0080.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ9020516e-90HQ902051.2 Populus laurifolia MORC family ATPase (VP) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024460273.10.0B3 domain-containing transcription repressor VAL2
SwissprotQ6Z3U30.0Y7797_ORYSJ; B3 domain-containing protein Os07g0679700
TrEMBLA0A2K2A0770.0A0A2K2A077_POPTR; Uncharacterized protein
STRINGPOPTR_0016s14350.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF110183239
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32010.10.0HSI2-like 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]