PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0905s0010.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family G2-like
Protein Properties Length: 370aa    MW: 41139.6 Da    PI: 9.4317
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0905s0010.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like1017.7e-3263116255
                 G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                             prlrWtpeLH +Fv+ave+LGG+e+AtPk +l+lm+v+gL+++hvkSHLQ+YR+
  SapurV1A.0905s0010.1.p  63 PRLRWTPELHLCFVKAVERLGGQERATPKLVLQLMNVNGLSIAHVKSHLQMYRT 116
                             8****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.4E-2959117IPR009057Homeodomain-like
PROSITE profilePS5129414.05759119IPR017930Myb domain
SuperFamilySSF466897.7E-1562117IPR009057Homeodomain-like
TIGRFAMsTIGR015573.3E-2363118IPR006447Myb domain, plants
PfamPF002497.2E-1064115IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 370 aa     Download sequence    Send to blast
MEISNHSGCS KTSASLQDQD ESAGGENDNE ESRPGKGGSS SNSTVEESEN KSSVRPYVRS  60
KLPRLRWTPE LHLCFVKAVE RLGGQERATP KLVLQLMNVN GLSIAHVKSH LQMYRTKKVD  120
DPSQGMADQN IYNLSQLPML QGYNQYQRQN SGFRYGDASW NARENFIYNP HVGRCVSDRT  180
RPGSYGTVTE RIFGSTNNSF WGASSGRFQM GVSSLISQSK RKIEELKGDQ QFPQSLQNNR  240
FWQSQPSPSI IDVSPVVLPQ MQANVGESST HFKRFLPSDS KSTTGLQDRK TLKRKASECD  300
LDLDLSLKLT PAKDHDNSQR SLEGSAKVNS DELSLSLYSP SSSRLSRLKR DGDENKDHGK  360
RASTLDLTI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A4e-1964118357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B4e-1964118357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C4e-1964118357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D4e-1964118357Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00297DAPTransfer from AT2G38300Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0905s0010.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2165440.0AC216544.1 Populus trichocarpa clone POP016-D10, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011046839.10.0PREDICTED: putative Myb family transcription factor At1g14600
RefseqXP_011046840.10.0PREDICTED: putative Myb family transcription factor At1g14600
TrEMBLA0A2K1XEP60.0A0A2K1XEP6_POPTR; Uncharacterized protein
STRINGPOPTR_0016s12940.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF23783482
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38300.12e-50G2-like family protein