PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0903s0010.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | WRKY | ||||||||
Protein Properties | Length: 332aa MW: 36346.2 Da PI: 10.0027 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 99.5 | 2e-31 | 260 | 316 | 3 | 58 |
-SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS CS WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnh 58 D y+WrKYGqK++kgs++pr+YY+C+s gCp++k+ver+ +dp+++++tYegeHnh SapurV1A.0903s0010.1.p 260 DDYSWRKYGQKPIKGSPHPRGYYKCSSVrGCPARKHVERALDDPSMLVVTYEGEHNH 316 99************************988**************************** PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF10533 | 3.1E-18 | 211 | 256 | IPR018872 | Zn-cluster domain |
Gene3D | G3DSA:2.20.25.80 | 9.7E-33 | 246 | 316 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 30.756 | 253 | 319 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 9.81E-27 | 256 | 316 | IPR003657 | WRKY domain |
SMART | SM00774 | 4.5E-38 | 258 | 318 | IPR003657 | WRKY domain |
Pfam | PF03106 | 4.0E-27 | 260 | 316 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 332 aa Download sequence Send to blast |
MAVELMMGYR NDSFVIASKM EENAVQEAAS GLESVNKLIR LLSQQNPHQS STSTSRTSMD 60 MEIDCKAVAD VAVSKFKKVI SLLGRNRTGH ARFRRAPNST PPIDQRQELS YQVPEANSKV 120 YYALPIQQVP PPVLNQNHYP TLVPKNGVIE RKDSAASTIN FSYSSAGNSF VSSLTGDTDS 180 KQPSSSSAFQ FTNVSQASSA GKPPLSTSSL KRKCSSENLD SAGKCASSGR CHCSKKRKMR 240 LKRVVRVPAI SLKMSDIPPD DYSWRKYGQK PIKGSPHPRG YYKCSSVRGC PARKHVERAL 300 DDPSMLVVTY EGEHNHIISV AETSNLILES S* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 8e-21 | 256 | 318 | 15 | 76 | Probable WRKY transcription factor 4 |
2lex_A | 8e-21 | 256 | 318 | 15 | 76 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0903s0010.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By salicylic acid and strongly during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EF148210 | 0.0 | EF148210.1 Populus trichocarpa clone WS0128_M02 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006380693.1 | 0.0 | probable WRKY transcription factor 7 isoform X2 | ||||
Swissprot | Q9STX0 | 2e-96 | WRKY7_ARATH; Probable WRKY transcription factor 7 | ||||
TrEMBL | A9PII7 | 0.0 | A9PII7_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0007s10670.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2177 | 34 | 86 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G24240.1 | 4e-88 | WRKY DNA-binding protein 7 |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0903s0010.1.p |