PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0901s0090.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | TCP | ||||||||
Protein Properties | Length: 352aa MW: 38925.7 Da PI: 9.8742 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 102.1 | 9.6e-32 | 48 | 146 | 2 | 89 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.....eaesssssas 83 g+kdrhsk++T +g+RdRRvRls+++a++++dLqd+LG+ ++sk ++WLl++ak++i+el+ ++ ++ ++ ++ss++ +s SapurV1A.0901s0090.1.p 48 FGGKDRHSKVCTIRGLRDRRVRLSVPTAIQLYDLQDRLGLNQPSKVVDWLLNAAKHEIDELPPLPIPPGIFSlnrqaMPGSSHEVGS 134 689*************************************************************77776444221121111111111 PP TCP 84 nsssg......k 89 ++ss+ + SapurV1A.0901s0090.1.p 135 SQSSKevlkmsN 146 111112222220 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51369 | 31.469 | 50 | 108 | IPR017887 | Transcription factor TCP subgroup |
Pfam | PF03634 | 2.2E-29 | 50 | 169 | IPR005333 | Transcription factor, TCP |
Sequence ? help Back to Top |
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Protein Sequence Length: 352 aa Download sequence Send to blast |
MIPSSKQVGS PAKKEENSND SKISKASSSS GTWLRLKDPR IVRVSRAFGG KDRHSKVCTI 60 RGLRDRRVRL SVPTAIQLYD LQDRLGLNQP SKVVDWLLNA AKHEIDELPP LPIPPGIFSL 120 NRQAMPGSSH EVGSSQSSKE VLKMSNSINW EDTSGFTRPG FWNADAILRA KSKEVAIDPV 180 NEKENWKKRD EEDKQDGNIE GNSAQVLSGG FFQRASHSSL PKTPSFPLSH MGNHGFAAQT 240 GDIHNLNVLP FSSALSLSSG SQILVCPPVT TQSYFPSHAT TSMEIDPRQI NHFQWLTPST 300 QNHLPNSLTP SPYPINQSMR PYSQYFSVTP RVLHSHNSES PPDKDPLFPF K* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 1e-17 | 55 | 109 | 1 | 55 | Putative transcription factor PCF6 |
5zkt_B | 1e-17 | 55 | 109 | 1 | 55 | Putative transcription factor PCF6 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0901s0090.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002305384.1 | 0.0 | transcription factor TCP13 isoform X1 | ||||
Refseq | XP_024449006.1 | 0.0 | transcription factor TCP13 isoform X1 | ||||
Refseq | XP_024454630.1 | 0.0 | transcription factor TCP13 isoform X1 | ||||
Refseq | XP_024454631.1 | 0.0 | transcription factor TCP13 isoform X1 | ||||
TrEMBL | B9H0G5 | 0.0 | B9H0G5_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0004s11510.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF932 | 34 | 119 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G02150.1 | 8e-39 | plastid transcription factor 1 |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0901s0090.1.p |