PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0893s0110.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | B3 | ||||||||
Protein Properties | Length: 150aa MW: 17588.2 Da PI: 9.2259 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 31 | 4.6e-10 | 5 | 89 | 2 | 87 |
EEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS B3 2 fkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 k+l +d+ + rl++p +++e+ g+ +s++l+++d+ g+ +++ ++ ++ vl++GW +Fv + gL++gD v+ ++++ SapurV1A.0893s0110.1.p 5 SKEL--KDTDVRVRLSFPTHCLEHLdfAGN--NSVDLRVKDSCGELRVIRCLKrNGDYEKPVLSRGWLKFVADYGLRVGDKAVLLREDD 89 5666..556666789***999966676444..799*********9999999653444455********************999886554 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 1.59E-11 | 3 | 91 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 3.9E-12 | 3 | 91 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 6.80E-14 | 3 | 102 | No hit | No description |
Sequence ? help Back to Top |
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Protein Sequence Length: 150 aa Download sequence Send to blast |
MEIFSKELKD TDVRVRLSFP THCLEHLDFA GNNSVDLRVK DSCGELRVIR CLKRNGDYEK 60 PVLSRGWLKF VADYGLRVGD KAVLLREDDH NLGSQFRIEA KRRIVLFGRE AWGHDKSYFL 120 ALIRMERACS GQIHIYIYRE RERERERTS* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0893s0110.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC210344 | 1e-116 | AC210344.1 Populus trichocarpa clone POP100-P10, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002303154.3 | 1e-65 | uncharacterized protein LOC7480761 | ||||
TrEMBL | A0A2K2B047 | 2e-64 | A0A2K2B047_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0003s01220.1 | 5e-66 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF12594 | 4 | 14 |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0893s0110.1.p |