PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0875s0050.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family CO-like
Protein Properties Length: 379aa    MW: 41703.7 Da    PI: 6.8182
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0875s0050.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box261.8e-081963338
                zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg.........Ht 38
                            +++C+ ++ + +  fC+ ++ +lC +C  ++H++         H+
  SapurV1A.0875s0050.1.p 19 AKRCDSCKTEAAAAFCRVDSAFLCLNCDIKIHHSgvsskimsrHE 63
                            579****************************75446666666665 PP
2zf-B_box27.18.8e-0965110342
                zf-B_box   3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 
                              ++C+ +e+ ++   C+ +   lC +C   +H+       H++vp+
  SapurV1A.0875s0050.1.p  65 VWMCEVCEQAPAVVTCKADAAALCVTCDADIHSAnplarrHERVPV 110
                             689*****************************66899999999986 PP
3CCT64.53.2e-22305348144
                     CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                             Rea++lRY+e rk+RkFeK+irY+sRKa+Ae+RpR+KGrF+k++
  SapurV1A.0875s0050.1.p 305 REARVLRYRERRKNRKFEKTIRYASRKAYAETRPRIKGRFAKRT 348
                             9*****************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.7361767IPR000315B-box-type zinc finger
SMARTSM003369.3E-41756IPR000315B-box-type zinc finger
PfamPF006434.1E-62063IPR000315B-box-type zinc finger
CDDcd000213.07E-72167No hitNo description
PROSITE profilePS5011910.76563110IPR000315B-box-type zinc finger
SMARTSM003366.0E-1663110IPR000315B-box-type zinc finger
PfamPF006438.4E-765110IPR000315B-box-type zinc finger
CDDcd000212.25E-966110No hitNo description
PROSITE profilePS5101716.638305347IPR010402CCT domain
PfamPF062031.2E-16305347IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 379 aa     Download sequence    Send to blast
MGIVVENLRN LTGGWRAAAK RCDSCKTEAA AAFCRVDSAF LCLNCDIKIH HSGVSSKIMS  60
RHERVWMCEV CEQAPAVVTC KADAAALCVT CDADIHSANP LARRHERVPV EPFYDSAESI  120
VRTSSEFNFL VPAYDHNDEV EGISWLLHSN HTAHDLNCKL HIENPAAKTE DMFFSELDPF  180
LDLEYQNPMD GSYKQSPGGG GAGADSVVPV QNKPAPLPAI NHKNCFDIDF CRSNLTSFSS  240
YPSHSLSHSV SSSSLDVGVV PDGNSMSDIS YPFGRSITTF TNPSMPISSG SSTNQAATQL  300
AGTDREARVL RYRERRKNRK FEKTIRYASR KAYAETRPRI KGRFAKRTEM ESDMDSLYSS  360
TSSVPFLADT QYGVVPSF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0875s0050.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024460543.10.0zinc finger protein CONSTANS-LIKE 5
SwissprotQ9FHH81e-119COL5_ARATH; Zinc finger protein CONSTANS-LIKE 5
TrEMBLA0A2I4KKP00.0A0A2I4KKP0_POPTR; Co-like family protein
STRINGPOPTR_0018s10510.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13023493
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57660.11e-96CONSTANS-like 5
Publications ? help Back to Top
  1. Vercruyssen L, et al.
    ANGUSTIFOLIA3 binds to SWI/SNF chromatin remodeling complexes to regulate transcription during Arabidopsis leaf development.
    Plant Cell, 2014. 26(1): p. 210-29
    [PMID:24443518]