PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0869s0100.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | WRKY | ||||||||
Protein Properties | Length: 500aa MW: 54706.3 Da PI: 6.1702 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 96.1 | 2.4e-30 | 268 | 327 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 ++Dg++WrKYGqK kg+++pr+YYrCt a gCpv+k+v+r+ ed +++++tYeg+Hnh+ SapurV1A.0869s0100.1.p 268 MNDGCQWRKYGQKIAKGNPCPRAYYRCTVApGCPVRKQVQRCLEDMSILITTYEGNHNHP 327 58***************************99****************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 3.7E-32 | 253 | 329 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 3.14E-27 | 262 | 329 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 28.851 | 263 | 329 | IPR003657 | WRKY domain |
SMART | SM00774 | 2.2E-37 | 268 | 328 | IPR003657 | WRKY domain |
Pfam | PF03106 | 5.4E-27 | 269 | 327 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 500 aa Download sequence Send to blast |
MDIDLSLKMD AENEEEEDGD EERHGREGEG NHQESEVDRE NTHDINEAAG GATTTTTIGG 60 GGGGGGGDDS SLELSLQESS KTEELSGLHM KISRMKEENK VLRKIVDQTM KDFHDLQIRF 120 AALQQNLDQK KDPQISLGLH ANDKKAVQEV AKAIPRQFDS NYIQRHQAVA STKGDSTDGE 180 GADELGLSLR LQTSSSQQER EEDMEENNKE DPTALFAPAI SQNNNNNSNS NKVQRTDLGG 240 SGISAHGASL ANRKARVSVR ARCQGATMND GCQWRKYGQK IAKGNPCPRA YYRCTVAPGC 300 PVRKQVQRCL EDMSILITTY EGNHNHPLPV GATAMASTAS AAASFMLMNS SNPLSDGMIS 360 AGQANSLPFH AWNPQYPPNF RTVNPNDPSK GIVLDLTHDR DRSVLQYPIM ASSSQYSSSS 420 AGHNQYPGSF SNWMQSRSSS YQNSAATVHH EERKLGETGY NRIQNLPESF MVKNNNFTFH 480 HESISIAIIK KVLVVINKP* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 2e-22 | 255 | 331 | 1 | 76 | WRKY transcription factor 1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0869s0100.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024466667.1 | 0.0 | probable WRKY transcription factor 9 | ||||
TrEMBL | B9GF77 | 0.0 | B9GF77_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0001s21580.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF9320 | 31 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68150.1 | 7e-56 | WRKY DNA-binding protein 9 |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0869s0100.1.p |