PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SapurV1A.0863s0090.1.p

Organism

Salix purpurea

Taxonomic ID

77065

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix

Family

WRKY

Protein Properties

Length: 340aa MW: 37096.8 Da PI: 10.1097

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SapurV1A.0863s0090.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	100.2	1.2e-31	254	312	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 D+y+WrKYGqK++kgs++pr+YY+C++ gCp++k+ver+++dp+++++tYegeH+h+ SapurV1A.0863s0090.1.p 254 ADEYSWRKYGQKPIKGSPHPRGYYKCSTMrGCPARKHVERATDDPSMLIVTYEGEHRHT 312 69**********************9877**************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF10533	2.0E-17	205	251	IPR018872	Zn-cluster domain
Gene3D	G3DSA:2.20.25.80	7.2E-33	241	313	IPR003657	WRKY domain
PROSITE profile	PS50811	30.526	248	314	IPR003657	WRKY domain
SuperFamily	SSF118290	1.44E-26	251	313	IPR003657	WRKY domain
SMART	SM00774	3.9E-38	253	313	IPR003657	WRKY domain
Pfam	PF03106	2.0E-27	255	311	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010200	Biological Process	response to chitin
GO:0042742	Biological Process	defense response to bacterium
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0005516	Molecular Function	calmodulin binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 340 aa Download sequence Send to blast
MAVELMSFNR KIDDQTAIHE AASQGIKSME HLIRIMSHQN NHHVADCTDL TDVTVTKFKK 60 VISLLNRTGH ARFRRAPVQP NQQDKFPLSS TSTSTQSPQS QSQPPSVSRI QNLTLTPQKI 120 APPVTSLPAP PTSLTLDFTK ANIFSSKSAE IEFSKDSFSV SSNSTSFMSS GITGEGSVSN 180 GKQGSSIFLG SAGKPPLSTV PYSNKRRCDE HHHDDSVSGS SSGKCHCSSK RRKNRVKKTI 240 RVPAISSKIA DIPADEYSWR KYGQKPIKGS PHPRGYYKCS TMRGCPARKH VERATDDPSM 300 LIVTYEGEHR HTQTAMEGNS SMAGAGTVNL VFESTMMVE*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ayd_A	8e-21	241	311	2	71	WRKY transcription factor 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). Regulates rhizobacterium B.cereus AR156-induced systemic resistance (ISR) to P.syringae pv. tomato DC3000, probably by activating the jasmonic acid (JA)- signaling pathway (PubMed:26433201). {ECO:0000250, ECO:0000269\|PubMed:26433201}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00464	DAP	Transfer from AT4G31550	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	SapurV1A.0863s0090.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Strongly during leaf senescence (PubMed:11722756). Repressed by rhizobacterium B.cereus AR156 in leaves, and to a lower extent, by P.fluorescens WCS417r (PubMed:26433201). {ECO:0000269\|PubMed:11722756, ECO:0000269\|PubMed:26433201}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	GQ377444	0.0	GQ377444.1 (Populus tomentosa x P. bolleana) x P. tomentosa WRKY transcription factor 24 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002324382.1	0.0	probable WRKY transcription factor 11
Swissprot	Q9SV15	1e-134	WRK11_ARATH; Probable WRKY transcription factor 11
TrEMBL	B9ILE4	0.0	B9ILE4_POPTR; WRKY family protein
STRING	POPTR_0018s03450.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1314	34	98

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G31550.2	1e-107	WRKY DNA-binding protein 11

Link Out ? help Back to Top
Phytozome	SapurV1A.0863s0090.1.p

Publications ? help Back to Top
Haas BJ, et al. Full-length messenger RNA sequences greatly improve genome annotation. Genome Biol., 2002. 3(6): p. RESEARCH0029 [PMID:12093376] Brand LH,Kirchler T,Hummel S,Chaban C,Wanke D DPI-ELISA: a fast and versatile method to specify the binding of plant transcription factors to DNA in vitro. Plant Methods, 2010. 6: p. 25 [PMID:21108821] Brand LH, et al. Screening for protein-DNA interactions by automatable DNA-protein interaction ELISA. PLoS ONE, 2013. 8(10): p. e75177 [PMID:24146751] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Ali MA,Wieczorek K,Kreil DP,Bohlmann H The beet cyst nematode Heterodera schachtii modulates the expression of WRKY transcription factors in syncytia to favour its development in Arabidopsis roots. PLoS ONE, 2014. 9(7): p. e102360 [PMID:25033038] Jiang CH, et al. Transcription factors WRKY70 and WRKY11 served as regulators in rhizobacterium Bacillus cereus AR156-induced systemic resistance to Pseudomonas syringae pv. tomato DC3000 in Arabidopsis. J. Exp. Bot., 2016. 67(1): p. 157-74 [PMID:26433201] Ali MA, et al. Transcription factors WRKY11 and WRKY17 are involved in abiotic stress responses in Arabidopsis. J. Plant Physiol., 2018. 226: p. 12-21 [PMID:29689430]