PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SapurV1A.0862s0060.2.p

Organism

Salix purpurea

Taxonomic ID

77065

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix

Family

C2H2

Protein Properties

Length: 689aa MW: 77249 Da PI: 7.1318

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SapurV1A.0862s0060.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.5	0.00091	77	98	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 kC++C++ F ++ n++rH+r+H SapurV1A.0862s0060.2.p 77 KCSKCSREFCSSINYRRHLRVH 98 7********************6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50157	10.346	76	103	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	78	99	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 689 aa Download sequence Send to blast
MPVVKPVNSI TDVMRPDEGN DSSLDTFIRD TIGKQPLLSF SRPNDNPVQW IQLLHALDQP 60 DYPGWPLLTP LKVQMQKCSK CSREFCSSIN YRRHLRVHHR LKRLDKDSAK NRDLLGAFWD 120 KLSEDEGKEI LSFKDVTFEE VPGSSIIRSL TTVIRKPGIS SLTQSCWRAG STLLDLVQGR 180 PSRFPLSSEQ LFSILDDASE KTFLCGTAVL IQKYIFDGGA GKIGLETKNI VACTSFVVEQ 240 KLINAWLAEQ DAEALRCQNL LVEEEEAAQR RQVELLERKR QKKLRLKEQK EKEQRLDEKV 300 DDKECIEDTL ESVPQAEQSC PLAISDSDSL GSETLPDDVP SSLEPLQLTR TDEDFDLENH 360 MGCGGGRSML QGKSYRHVVV AQWHAPLKSQ WNHLSYGFHA NQNSHAPKPG TKQKHGNQRD 420 FNFKPGPVMN GNRKWSRKPK PEYNGESLKD RMQKEVVTGL DHDKKGEVLI GSISVTLGDC 480 SNDGGNNSDG VRDGCLVEHE ILKKKNVQEK HYRPDLVQCG SSRSTVKLWR PVSRNGMKGQ 540 MITENVSREC QHDSIDGKGE DQIFNDSSLR SCAMDNTFGG MENDSLPGRL LPGVMQFTSH 600 EARAFLAERW KEAIAAEHVK LALSPGNQIA TNHSSDISKH NDISRAENQS VDVEAQESST 660 SGADRAKYKT KPDNGVKLKY IPKQRTII*

Sequence ? help Back to Top

Protein Sequence Length: 689 aa Download sequence Send to blast

MPVVKPVNSI TDVMRPDEGN DSSLDTFIRD TIGKQPLLSF SRPNDNPVQW IQLLHALDQP  60
DYPGWPLLTP LKVQMQKCSK CSREFCSSIN YRRHLRVHHR LKRLDKDSAK NRDLLGAFWD  120
KLSEDEGKEI LSFKDVTFEE VPGSSIIRSL TTVIRKPGIS SLTQSCWRAG STLLDLVQGR  180
PSRFPLSSEQ LFSILDDASE KTFLCGTAVL IQKYIFDGGA GKIGLETKNI VACTSFVVEQ  240
KLINAWLAEQ DAEALRCQNL LVEEEEAAQR RQVELLERKR QKKLRLKEQK EKEQRLDEKV  300
DDKECIEDTL ESVPQAEQSC PLAISDSDSL GSETLPDDVP SSLEPLQLTR TDEDFDLENH  360
MGCGGGRSML QGKSYRHVVV AQWHAPLKSQ WNHLSYGFHA NQNSHAPKPG TKQKHGNQRD  420
FNFKPGPVMN GNRKWSRKPK PEYNGESLKD RMQKEVVTGL DHDKKGEVLI GSISVTLGDC  480
SNDGGNNSDG VRDGCLVEHE ILKKKNVQEK HYRPDLVQCG SSRSTVKLWR PVSRNGMKGQ  540
MITENVSREC QHDSIDGKGE DQIFNDSSLR SCAMDNTFGG MENDSLPGRL LPGVMQFTSH  600
EARAFLAERW KEAIAAEHVK LALSPGNQIA TNHSSDISKH NDISRAENQS VDVEAQESST  660
SGADRAKYKT KPDNGVKLKY IPKQRTII*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	276	283	ERKRQKKL

Cis-element ? help Back to Top
Source	Link
PlantRegMap	SapurV1A.0862s0060.2.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006377062.2	0.0	uncharacterized protein LOC18103947
TrEMBL	A0A2K1YDH3	0.0	A0A2K1YDH3_POPTR; Uncharacterized protein
STRING	POPTR_0012s13010.1	0.0	(Populus trichocarpa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G25610.1	1e-134	C2H2-like zinc finger protein

Link Out ? help Back to Top
Phytozome	SapurV1A.0862s0060.2.p