PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0853s0040.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family CPP
Protein Properties Length: 559aa    MW: 60902.8 Da    PI: 7.9168
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0853s0040.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR44.14.1e-14124163242
                     TCR   2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkeek 42 
                             ++++CnCk+s+Clk+YCeCfa+g++C+  C+C +C N+ e+
  SapurV1A.0853s0040.1.p 124 KQRQCNCKHSRCLKLYCECFASGTYCDG-CNCVNCYNNVEN 163
                             789*************************.********9875 PP
2TCR512.9e-16208247140
                     TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                             k++kgC+Ckks ClkkYCeCf+a+  Cse+CkC dCkN e
  SapurV1A.0853s0040.1.p 208 KHNKGCHCKKSGCLKKYCECFQANILCSENCKCMDCKNFE 247
                             589***********************************65 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011143.4E-15123163IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163436.442124248IPR005172CRC domain
PfamPF036387.5E-11126160IPR005172CRC domain
SMARTSM011148.4E-20208249IPR033467Tesmin/TSO1-like CXC domain
PfamPF036381.1E-12211246IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 559 aa     Download sequence    Send to blast
MGESEGSEFP PKKQQQQPEN ADFPIKRLAR QLDFTQGVLP DHPQSQPPPL QKSPLLVSPA  60
AAQSQSQPQP HPQSQLQLQP KVVEIQVEPQ QQQQQQQPVR AVKPESPKSI PIPNTELKDG  120
TPKKQRQCNC KHSRCLKLYC ECFASGTYCD GCNCVNCYNN VENEAARREA VEATLERNPN  180
AFRPKIASSP HGTRDSREET GDGLVFVKHN KGCHCKKSGC LKKYCECFQA NILCSENCKC  240
MDCKNFEGSE ERRALFHGDH GNNMAYIQQA ANAAITGAIG SSGYASPPVS WKRKGQELFF  300
GQAVKDPSFD RIGHFQQGSH IKPPAPCSSL PSNPVGPITL GPSKITYRSL LADIIQPQDL  360
KELCSVLVVL SGEAAKTFSD QRETLLASST EESADGADMP KGRPMSPGTL ELMCDEQDTM  420
FMAAASPHGL MGQGCNTYSQ LPCGQGMTEA HAEQERIVLT KFRDCLNRLI TFGEIKETKC  480
SSLARTELGN QKDPLSNGIG NTRTGTGSQR RPFSNGVVKV VPPPAKPTQM VTSIVSTSDS  540
DLQKIPGLPQ NGDNKLKS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A4e-321162572132Protein lin-54 homolog
5fd3_B4e-321162572132Protein lin-54 homolog
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPlays a role in development of both male and female reproductive tissues. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0853s0040.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2166731e-179AC216673.1 Populus trichocarpa clone POP019-C15, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024446433.10.0protein tesmin/TSO1-like CXC 5
RefseqXP_024446434.10.0protein tesmin/TSO1-like CXC 5
SwissprotQ9SZD10.0TCX5_ARATH; Protein tesmin/TSO1-like CXC 5
TrEMBLA0A2K1WXT60.0A0A2K1WXT6_POPTR; Uncharacterized protein
STRINGXP_002514278.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF26263379
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29000.11e-159Tesmin/TSO1-like CXC domain-containing protein