PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0851s0010.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | LBD | ||||||||
Protein Properties | Length: 231aa MW: 25002.2 Da PI: 6.6501 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 95.6 | 5.2e-30 | 4 | 108 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilk 82 +C++C+vlr++C +dC + p++ p++q++++ +++k++G++ +++l+++ p++ r+++++sl+yeA+ r+ +PvyG+vg++++ SapurV1A.0851s0010.1.p 4 SCNGCRVLRKGCGDDCSIKPCLqwiknPDSQANATLFLAKFYGRAGLMNLINDGPQHLRPAIFKSLLYEACGRIVNPVYGSVGLLWT 90 6************************************************************************************** PP DUF260 83 lqqqleqlkaelallkee 100 +++q +q+++e++l +e+ SapurV1A.0851s0010.1.p 91 GSWQQCQAAVEAVLKGEP 108 ***********9988765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 16.379 | 3 | 109 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.0E-24 | 4 | 103 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 231 aa Download sequence Send to blast |
MRASCNGCRV LRKGCGDDCS IKPCLQWIKN PDSQANATLF LAKFYGRAGL MNLINDGPQH 60 LRPAIFKSLL YEACGRIVNP VYGSVGLLWT GSWQQCQAAV EAVLKGEPIT EIESTDQLAL 120 DASDIRHVSK EGDWSASHHL RKVKTKSLFK RSASKPKSSR GEAEHTAFEL MVGCDGLRSV 180 SPDSVLSWRP SSGSDSGETD SLSVETVEAC KPDEPAERSD LGLDLTLGNY * |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0851s0010.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002317916.3 | 1e-130 | LOB domain-containing protein 40 | ||||
Swissprot | Q9M886 | 2e-70 | LBD41_ARATH; LOB domain-containing protein 41 | ||||
TrEMBL | A0A2K1Y9E0 | 1e-129 | A0A2K1Y9E0_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0012s05340.1 | 1e-130 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1546 | 34 | 99 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G02550.1 | 1e-72 | LOB domain-containing protein 41 |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0851s0010.1.p |