PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0846s0030.3.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family LSD
Protein Properties Length: 118aa    MW: 11848.9 Da    PI: 8.4173
Description LSD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0846s0030.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-LSD1413e-133862125
                 zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                            C+gCr+lL YP GA sV+Ca+C++V
  SapurV1A.0846s0030.3.p 38 CSGCRNLLLYPVGANSVCCAVCNAV 62
                            ************************9 PP

2zf-LSD138.81.5e-1277101125
                 zf-LSD1   1 CggCrtlLsYPrGApsVRCalCdtV 25 
                             Cg+Cr lL+Y +GA+sV+Ca+C +V
  SapurV1A.0846s0030.3.p  77 CGSCRMLLMYQYGARSVKCAVCSFV 101
                             **********************988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
TIGRFAMsTIGR010531.3E-123565IPR005735Zinc finger, LSD1-type
PfamPF069432.1E-103862IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010531.0E-1274102IPR005735Zinc finger, LSD1-type
PfamPF069431.1E-1177101IPR005735Zinc finger, LSD1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009814Biological Processdefense response, incompatible interaction
GO:0034051Biological Processnegative regulation of plant-type hypersensitive response
GO:0034052Biological Processpositive regulation of plant-type hypersensitive response
GO:0045595Biological Processregulation of cell differentiation
GO:2000121Biological Processregulation of removal of superoxide radicals
Sequence ? help Back to Top
Protein Sequence    Length: 118 aa     Download sequence    Send to blast
MPVPLAPYPA PPAPCAPPPP PPPPPAAAAN GAQSQLVCSG CRNLLLYPVG ANSVCCAVCN  60
AVTAVPPPAN QVAHVNCGSC RMLLMYQYGA RSVKCAVCSF VTPVGVSTSS TQQKFNA*
Functional Description ? help Back to Top
Source Description
UniProtPositive regulator of reactive oxygen-induced cell death. May be involved in the repression of the copper/zinc superoxide dismutase CSD1 and CSD2 that detoxify accumulating superoxide before the reactive oxygen species (ROS) can trigger a cell death cascade. LSD1 and LOL1 have antagonistic effects on CSD1 and CSD2 accumulation to regulate oxidative stress-induced cell death. {ECO:0000269|PubMed:12732715}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0846s0030.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCU2322476e-39CU232247.1 Populus EST from mild drought-stressed leaves.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018486329.15e-53PREDICTED: protein LOL1-like isoform X2
SwissprotQ93ZB15e-42LOL1_ARATH; Protein LOL1
TrEMBLA0A0D3CGN53e-50A0A0D3CGN5_BRAOL; Uncharacterized protein
STRINGBo5g087050.15e-51(Brassica oleracea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32540.34e-21lsd one like 1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]