PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0846s0030.3.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | LSD | ||||||||
Protein Properties | Length: 118aa MW: 11848.9 Da PI: 8.4173 | ||||||||
Description | LSD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-LSD1 | 41 | 3e-13 | 38 | 62 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C+gCr+lL YP GA sV+Ca+C++V SapurV1A.0846s0030.3.p 38 CSGCRNLLLYPVGANSVCCAVCNAV 62 ************************9 PP | |||||||
2 | zf-LSD1 | 38.8 | 1.5e-12 | 77 | 101 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+Cr lL+Y +GA+sV+Ca+C +V SapurV1A.0846s0030.3.p 77 CGSCRMLLMYQYGARSVKCAVCSFV 101 **********************988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
TIGRFAMs | TIGR01053 | 1.3E-12 | 35 | 65 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 2.1E-10 | 38 | 62 | IPR005735 | Zinc finger, LSD1-type |
TIGRFAMs | TIGR01053 | 1.0E-12 | 74 | 102 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 1.1E-11 | 77 | 101 | IPR005735 | Zinc finger, LSD1-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009814 | Biological Process | defense response, incompatible interaction | ||||
GO:0034051 | Biological Process | negative regulation of plant-type hypersensitive response | ||||
GO:0034052 | Biological Process | positive regulation of plant-type hypersensitive response | ||||
GO:0045595 | Biological Process | regulation of cell differentiation | ||||
GO:2000121 | Biological Process | regulation of removal of superoxide radicals |
Sequence ? help Back to Top |
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Protein Sequence Length: 118 aa Download sequence Send to blast |
MPVPLAPYPA PPAPCAPPPP PPPPPAAAAN GAQSQLVCSG CRNLLLYPVG ANSVCCAVCN 60 AVTAVPPPAN QVAHVNCGSC RMLLMYQYGA RSVKCAVCSF VTPVGVSTSS TQQKFNA* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Positive regulator of reactive oxygen-induced cell death. May be involved in the repression of the copper/zinc superoxide dismutase CSD1 and CSD2 that detoxify accumulating superoxide before the reactive oxygen species (ROS) can trigger a cell death cascade. LSD1 and LOL1 have antagonistic effects on CSD1 and CSD2 accumulation to regulate oxidative stress-induced cell death. {ECO:0000269|PubMed:12732715}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0846s0030.3.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CU232247 | 6e-39 | CU232247.1 Populus EST from mild drought-stressed leaves. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018486329.1 | 5e-53 | PREDICTED: protein LOL1-like isoform X2 | ||||
Swissprot | Q93ZB1 | 5e-42 | LOL1_ARATH; Protein LOL1 | ||||
TrEMBL | A0A0D3CGN5 | 3e-50 | A0A0D3CGN5_BRAOL; Uncharacterized protein | ||||
STRING | Bo5g087050.1 | 5e-51 | (Brassica oleracea) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G32540.3 | 4e-21 | lsd one like 1 |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0846s0030.3.p |
Publications ? help Back to Top | |||
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