PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0846s0030.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family LSD
Protein Properties Length: 156aa    MW: 15887.7 Da    PI: 8.0344
Description LSD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0846s0030.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-LSD140.44.7e-133862125
                 zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                            C+gCr+lL YP GA sV+Ca+C++V
  SapurV1A.0846s0030.1.p 38 CSGCRNLLLYPVGANSVCCAVCNAV 62
                            ************************9 PP

2zf-LSD144.13.3e-1477101125
                 zf-LSD1   1 CggCrtlLsYPrGApsVRCalCdtV 25 
                             C gC+tlL+Y rGA+sV+C++C+tV
  SapurV1A.0846s0030.1.p  77 CVGCHTLLMYIRGATSVQCSCCHTV 101
                             ************************9 PP

3zf-LSD138.22.4e-12115139125
                 zf-LSD1   1 CggCrtlLsYPrGApsVRCalCdtV 25 
                             Cg+Cr lL+Y +GA+sV+Ca+C +V
  SapurV1A.0846s0030.1.p 115 CGSCRMLLMYQYGARSVKCAVCSFV 139
                             **********************988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.90.10.109.6E-431136No hitNo description
TIGRFAMsTIGR010532.0E-123565IPR005735Zinc finger, LSD1-type
PfamPF069433.2E-103862IPR005735Zinc finger, LSD1-type
SuperFamilySSF486958.06E-552118IPR011031Multihaem cytochrome
TIGRFAMsTIGR010531.2E-1374103IPR005735Zinc finger, LSD1-type
PfamPF069431.8E-1177101IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010531.7E-12112140IPR005735Zinc finger, LSD1-type
PfamPF069431.8E-11115139IPR005735Zinc finger, LSD1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009814Biological Processdefense response, incompatible interaction
GO:0034051Biological Processnegative regulation of plant-type hypersensitive response
GO:0034052Biological Processpositive regulation of plant-type hypersensitive response
GO:0045595Biological Processregulation of cell differentiation
GO:2000121Biological Processregulation of removal of superoxide radicals
Sequence ? help Back to Top
Protein Sequence    Length: 156 aa     Download sequence    Send to blast
MPVPLAPYPA PPAPCAPPPP PPPPPAAAAN GAQSQLVCSG CRNLLLYPVG ANSVCCAVCN  60
AVTAVPPPGT EMAQLVCVGC HTLLMYIRGA TSVQCSCCHT VNLALEANQV AHVNCGSCRM  120
LLMYQYGARS VKCAVCSFVT PVGVSTSSTQ QKFNA*
Functional Description ? help Back to Top
Source Description
UniProtPositive regulator of reactive oxygen-induced cell death. May be involved in the repression of the copper/zinc superoxide dismutase CSD1 and CSD2 that detoxify accumulating superoxide before the reactive oxygen species (ROS) can trigger a cell death cascade. LSD1 and LOL1 have antagonistic effects on CSD1 and CSD2 accumulation to regulate oxidative stress-induced cell death. {ECO:0000269|PubMed:12732715}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0846s0030.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013638467.14e-87PREDICTED: protein LOL1
SwissprotQ93ZB11e-77LOL1_ARATH; Protein LOL1
TrEMBLA0A0D3CGN59e-86A0A0D3CGN5_BRAOL; Uncharacterized protein
STRINGBo5g087050.12e-86(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF81873346
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32540.35e-63lsd one like 1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]