PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0845s0090.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | LBD | ||||||||
Protein Properties | Length: 206aa MW: 22119 Da PI: 7.0497 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 94.6 | 1.1e-29 | 2 | 103 | 1 | 97 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilk 82 +C++C+vlr++C++ Cvl+ ++ p++q ++ +++k+FG+s +++l++a+pe++r+++++sl++eA+ r+ +Pv+Gavg++++ SapurV1A.0845s0090.1.p 2 SCNGCRVLRKGCSETCVLRSCMhwitnPDAQGYATLFLAKFFGRSDLMSLISAVPESQRPALFQSLLFEACGRTVNPVNGAVGLLWS 88 6*************************999********************************************************** PP DUF260 83 lqqqleqlkaelall 97 ++++++q+++e++l SapurV1A.0845s0090.1.p 89 GNWHVCQEAVETVLS 103 *********998875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 17.956 | 1 | 107 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 6.4E-25 | 2 | 101 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 206 aa Download sequence Send to blast |
MSCNGCRVLR KGCSETCVLR SCMHWITNPD AQGYATLFLA KFFGRSDLMS LISAVPESQR 60 PALFQSLLFE ACGRTVNPVN GAVGLLWSGN WHVCQEAVET VLSGGALRPL HGILTGFLAP 120 NCDESSDGFS AAVHDMAWNQ SKSFAKESNN EVVSDHHVNP CLARGIGGRG KRGREAVSFY 180 TGGESETISF ESSGGDQKRL LNLFV* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0845s0090.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB473874 | 2e-31 | AB473874.1 Arabidopsis thaliana ASL41 mRNA for ASYMMETRIC LEAVES2-like 41 protein, complete cds. | |||
GenBank | AY072144 | 2e-31 | AY072144.1 Arabidopsis thaliana unknown protein (At4g37540) mRNA, complete cds. | |||
GenBank | AY122976 | 2e-31 | AY122976.1 Arabidopsis thaliana unknown protein (At4g37540) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002301153.3 | 1e-132 | LOB domain-containing protein 39 | ||||
Swissprot | Q9FN11 | 3e-64 | LBD37_ARATH; LOB domain-containing protein 37 | ||||
TrEMBL | A0A1L6K5D3 | 1e-132 | A0A1L6K5D3_POPTO; LOB domain-containing protein 39-like | ||||
STRING | POPTR_0002s12020.1 | 1e-130 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF721 | 34 | 136 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G67420.1 | 1e-66 | LOB domain-containing protein 37 |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0845s0090.1.p |
Publications ? help Back to Top | |||
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