PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0835s0110.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family C2H2
Protein Properties Length: 288aa    MW: 31862.4 Da    PI: 8.4802
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0835s0110.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.40.00023113135123
                             EEETTTTEEESSHHHHHHHHHHT CS
                 zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                             ++C++C + F ++  L  H++ H
  SapurV1A.0835s0110.1.p 113 FSCNYCQRKFYSSQALGGHQNAH 135
                             89*****************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.31E-6109140No hitNo description
PROSITE profilePS5015711.427113140IPR007087Zinc finger, C2H2
PROSITE patternPS000280115135IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    Send to blast
MEPPARSEAC LSENSSLISV SNSPSCLRPS SAMESRKEGG KQREEDRAEE EQKHKQVGDT  60
DHDLVLDLSL SNKDSNQESS NPELNLIDSF DMNPSGKSLD STPQGNETEA RVFSCNYCQR  120
KFYSSQALGG HQNAHKRERT LVKRGQRVSE ASFSLLRPPY SHQNRYASMA SLPLHGSFDR  180
SLGIQVHSMI NKPSNTSSSS NIYGQNKWCR KPIDQQPAIM RLASEKFLVG TNISGSSSIK  240
GVARFESARK FSPVSNEGIG GFWWDVGVNH LKAKQDDLQK LDLSLKL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0835s0110.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002304721.21e-170zinc finger protein 1
TrEMBLB9GVJ11e-168B9GVJ1_POPTR; Uncharacterized protein
STRINGPOPTR_0003s17900.11e-169(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14393172
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10970.12e-45C2H2 family protein