PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0827s0020.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | G2-like | ||||||||
Protein Properties | Length: 149aa MW: 15618.5 Da PI: 6.8893 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 23 | 1.7e-07 | 5 | 29 | 30 | 54 |
G2-like 30 ktilelmkvkgLtlehvkSHLQkYR 54 k++++lm+++gLt+e+v SH +Y+ SapurV1A.0827s0020.1.p 5 KRVVQLMNIDGLTRENVVSHSRMYK 29 89**********************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 6.1E-6 | 5 | 30 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 149 aa Download sequence Send to blast |
MPSLKRVVQL MNIDGLTREN VVSHSRMYKS LRSWGLFSGG GAGGNGSTGG LSGGTGADTD 60 HLFASSLVLE PGRSCTANHH HQQMAAAAGH PVPFLPRQPL QAVHRMDASV ANTDPGRVEG 120 FEPPYGNGGR FVIDLFPSPV DLFPSPDD* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0827s0020.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024460441.1 | 6e-24 | transcription factor MYBC1 | ||||
TrEMBL | B9H8R8 | 1e-22 | B9H8R8_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0006s03340.1 | 2e-23 | (Populus trichocarpa) |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0827s0020.1.p |