PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0817s0120.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 180aa MW: 20740.5 Da PI: 8.1962 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 58.7 | 9.5e-19 | 24 | 78 | 3 | 57 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 k++++++eql+ Le F +++++ e++ +LA+ gL+ rqV vWFqNrRa++k+ SapurV1A.0817s0120.2.p 24 KKRQLSAEQLNFLEMNFGNDHKLESERKDKLAADSGLDPRQVAVWFQNRRARWKN 78 456899***********************************************95 PP | |||||||
2 | HD-ZIP_I/II | 114 | 9.2e-37 | 24 | 115 | 2 | 93 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLr 88 kkr+ls+eq+++LE++F +++kLe+erK +la + gl+prqvavWFqnrRAR+k+k+lE++y++Lk+a+++++ e+++Le+ev +L+ SapurV1A.0817s0120.2.p 24 KKRQLSAEQLNFLEMNFGNDHKLESERKDKLAADSGLDPRQVAVWFQNRRARWKNKKLEEEYTKLKTAHESIVVEKCQLESEVLKLK 110 9************************************************************************************** PP HD-ZIP_I/II 89 eelke 93 e+l++ SapurV1A.0817s0120.2.p 111 EQLSR 115 *9975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 15.888 | 19 | 79 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.5E-18 | 22 | 83 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 2.74E-17 | 23 | 86 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 4.5E-16 | 24 | 78 | IPR001356 | Homeobox domain |
CDD | cd00086 | 2.98E-14 | 24 | 80 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 8.3E-20 | 26 | 86 | IPR009057 | Homeodomain-like |
PROSITE pattern | PS00027 | 0 | 54 | 77 | IPR017970 | Homeobox, conserved site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 180 aa Download sequence Send to blast |
MCLGESKPRR RRRKNTGDGS GGAKKRQLSA EQLNFLEMNF GNDHKLESER KDKLAADSGL 60 DPRQVAVWFQ NRRARWKNKK LEEEYTKLKT AHESIVVEKC QLESEVLKLK EQLSRTEKEI 120 QRLADHVGRV STESPTSPLS MAMDPPFLGE YALEGYEDAF YMQPENSYIP GMEWINQYI* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00473 | DAP | Transfer from AT4G36740 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0817s0120.2.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By abscisic acid (ABA) and by salt stress. {ECO:0000269|PubMed:16055682}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006383237.1 | 7e-99 | homeobox-leucine zipper protein ATHB-40 | ||||
Swissprot | O23208 | 6e-64 | ATB40_ARATH; Homeobox-leucine zipper protein ATHB-40 | ||||
TrEMBL | B9MXR7 | 2e-97 | B9MXR7_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0005s12760.1 | 3e-98 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36740.1 | 3e-56 | homeobox protein 40 |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0817s0120.2.p |
Publications ? help Back to Top | |||
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