PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0817s0110.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | bZIP | ||||||||
Protein Properties | Length: 356aa MW: 37658 Da PI: 5.1218 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 71.7 | 1.1e-22 | 256 | 318 | 1 | 63 |
XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 e+elkr++rkq+NRe+ArrsR+RK+ae+eeL+ +v++L + N+ L++el++l++ + klkse+ SapurV1A.0817s0110.1.p 256 ERELKRQKRKQSNRESARRSRLRKQAECEELQARVDNLNNDNRNLRDELQSLSEDCNKLKSEN 318 89***********************************************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF07777 | 4.4E-31 | 1 | 94 | IPR012900 | G-box binding protein, multifunctional mosaic region |
Pfam | PF16596 | 2.9E-8 | 116 | 225 | No hit | No description |
Gene3D | G3DSA:1.20.5.170 | 1.3E-17 | 250 | 316 | No hit | No description |
SMART | SM00338 | 3.5E-19 | 256 | 320 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 1.4E-20 | 256 | 318 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 12.967 | 258 | 321 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 4.34E-11 | 259 | 316 | No hit | No description |
CDD | cd14702 | 7.83E-18 | 261 | 328 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 263 | 278 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010310 | Biological Process | regulation of hydrogen peroxide metabolic process | ||||
GO:0010629 | Biological Process | negative regulation of gene expression | ||||
GO:0090342 | Biological Process | regulation of cell aging | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 356 aa Download sequence Send to blast |
MGTGEESIPA KSSKPASSNQ EIPTTPSYPD WSNSMQAYYG AGATPPPFFA STVASPSPHP 60 YLWGSQHPLI PPYGTPVPYP ALYTAAGVYA HPNMALTPNT AQANTELEGK VPDGKDRASA 120 KKAKGTSGGK AVESGKAISD SGNDCASQSA ESGTDGSSDA SDENNNQQEY AANKKRSFNQ 180 MLADANAQSN SAEANIQTSV PGKPVVSTPA TNLNIGMDLW NASPAAAGAT KMTLNPSGAS 240 SGAVPAGMSE QWTQDERELK RQKRKQSNRE SARRSRLRKQ AECEELQARV DNLNNDNRNL 300 RDELQSLSED CNKLKSENDS IKEELTRLYG PEAVANLEQT NPVSDPKSHG GEGNS* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 272 | 278 | RRSRLRK |
2 | 272 | 279 | RRSRLRKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Binds to the G-box motif (5'-CCACGTGG-3') of the rbcS-1A gene promoter (PubMed:1373374). G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control. Binds to the G-box motif 5'-CACGTG-3' of LHCB2.4 (At3g27690) promoter. May act as transcriptional activator in light-regulated expression of LHCB2.4. Probably binds DNA as monomer. DNA-binding activity is redox-dependent (PubMed:22718771). {ECO:0000269|PubMed:1373374, ECO:0000269|PubMed:22718771}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00039 | PBM | Transfer from AT4G36730 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0817s0110.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EF148192 | 0.0 | EF148192.1 Populus trichocarpa clone WS0128_J07 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010999953.1 | 0.0 | PREDICTED: G-box-binding factor 1-like | ||||
Swissprot | P42774 | 1e-125 | GBF1_ARATH; G-box-binding factor 1 | ||||
TrEMBL | A0A2K2AFX4 | 0.0 | A0A2K2AFX4_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0007s12460.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5933 | 34 | 50 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36730.1 | 1e-112 | G-box binding factor 1 |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0817s0110.1.p |