PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0804s0040.8.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | WRKY | ||||||||
Protein Properties | Length: 355aa MW: 39445.3 Da PI: 9.3172 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 105.1 | 3.7e-33 | 73 | 129 | 3 | 60 |
-SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 DgynWrKYGqK+vkgse+prsYY+Ct+++Cpvkkkvers d+++ ei+Y+geHnh+k SapurV1A.0804s0040.8.p 73 DGYNWRKYGQKQVKGSEYPRSYYKCTYPNCPVKKKVERSF-DGQIAEIVYKGEHNHSK 129 9***************************************.***************85 PP | |||||||
2 | WRKY | 98.1 | 5.7e-31 | 273 | 330 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 Dg++WrKYGqK+vkg+++pr YYrCt +C+v+k+ver ++dp+++++tYeg+H he SapurV1A.0804s0040.8.p 273 GDGFRWRKYGQKTVKGNPYPRTYYRCTGIKCSVRKHVERVSDDPRAFITTYEGKHSHE 330 6********************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 1.6E-29 | 59 | 130 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 6.41E-26 | 70 | 130 | IPR003657 | WRKY domain |
SMART | SM00774 | 2.1E-36 | 71 | 129 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.0E-25 | 73 | 127 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 23.617 | 73 | 130 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 3.6E-32 | 257 | 332 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 2.09E-27 | 266 | 332 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 33.029 | 267 | 332 | IPR003657 | WRKY domain |
SMART | SM00774 | 5.5E-33 | 272 | 331 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.6E-24 | 274 | 329 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 355 aa Download sequence Send to blast |
MQMSQPVETR PQRTKQDKRN FSSQLTTSNL HQNIPSHAEA EQTSETLRLT SLNQEEDPKT 60 SSHASNGDRP SFDGYNWRKY GQKQVKGSEY PRSYYKCTYP NCPVKKKVER SFDGQIAEIV 120 YKGEHNHSKP QPPRHNSSGT QGLGAVSDRN GPDRNSTPIW SNQLNERNEG SGGREENLND 180 IGLPVHSIYQ GKAPPSYDPA GTGSVNAGAG TSENSCGLNG ECDDGSKGLE GDKYEPKRKR 240 RKTETATGVS ISREGVQEPR VLVQSSTDSE IVGDGFRWRK YGQKTVKGNP YPRTYYRCTG 300 IKCSVRKHVE RVSDDPRAFI TTYEGKHSHE MPLKRTKLAA LEPDSQAPPT GDRQ* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 6e-29 | 73 | 332 | 8 | 77 | Probable WRKY transcription factor 4 |
2lex_A | 6e-29 | 73 | 332 | 8 | 77 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 236 | 241 | KRKRRK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Regulates trichome development, production of mucilage and tannin in seed coats, and maybe root hair development. {ECO:0000269|PubMed:12084832}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0804s0040.8.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Not induced by salicylic acid or wounding. {ECO:0000269|PubMed:12084832}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EF179608 | 1e-178 | EF179608.1 (Populus tomentosa x P. bolleana) x P. tomentosa clone 01 WRKY transcription factor pseudogene, partial sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006381519.1 | 0.0 | WRKY transcription factor 44 | ||||
Refseq | XP_024459754.1 | 0.0 | WRKY transcription factor 44 | ||||
Refseq | XP_024459755.1 | 0.0 | WRKY transcription factor 44 | ||||
Refseq | XP_024459756.1 | 0.0 | WRKY transcription factor 44 | ||||
Refseq | XP_024459758.1 | 0.0 | WRKY transcription factor 44 | ||||
Refseq | XP_024459759.1 | 0.0 | WRKY transcription factor 44 | ||||
Swissprot | Q9ZUU0 | 5e-76 | WRK44_ARATH; WRKY transcription factor 44 | ||||
TrEMBL | U5GAH7 | 0.0 | U5GAH7_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0006s13550.1 | 0.0 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G37260.2 | 3e-77 | WRKY family protein |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0804s0040.8.p |