PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0804s0040.7.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | WRKY | ||||||||
Protein Properties | Length: 363aa MW: 40264.1 Da PI: 9.3172 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 105 | 3.9e-33 | 81 | 137 | 3 | 60 |
-SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 DgynWrKYGqK+vkgse+prsYY+Ct+++Cpvkkkvers d+++ ei+Y+geHnh+k SapurV1A.0804s0040.7.p 81 DGYNWRKYGQKQVKGSEYPRSYYKCTYPNCPVKKKVERSF-DGQIAEIVYKGEHNHSK 137 9***************************************.***************85 PP | |||||||
2 | WRKY | 98 | 5.9e-31 | 281 | 338 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 Dg++WrKYGqK+vkg+++pr YYrCt +C+v+k+ver ++dp+++++tYeg+H he SapurV1A.0804s0040.7.p 281 GDGFRWRKYGQKTVKGNPYPRTYYRCTGIKCSVRKHVERVSDDPRAFITTYEGKHSHE 338 6********************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 1.6E-29 | 67 | 138 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 6.67E-26 | 78 | 138 | IPR003657 | WRKY domain |
SMART | SM00774 | 2.1E-36 | 79 | 137 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 23.617 | 81 | 138 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.0E-25 | 81 | 135 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 3.7E-32 | 265 | 340 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 2.22E-27 | 274 | 340 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 33.029 | 275 | 340 | IPR003657 | WRKY domain |
SMART | SM00774 | 5.5E-33 | 280 | 339 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.6E-24 | 282 | 337 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 363 aa Download sequence Send to blast |
MGNFNGNSQQ MSQPVETRPQ RTKQDKRNFS SQLTTSNLHQ NIPSHAEAEQ TSETLRLTSL 60 NQEEDPKTSS HASNGDRPSF DGYNWRKYGQ KQVKGSEYPR SYYKCTYPNC PVKKKVERSF 120 DGQIAEIVYK GEHNHSKPQP PRHNSSGTQG LGAVSDRNGP DRNSTPIWSN QLNERNEGSG 180 GREENLNDIG LPVHSIYQGK APPSYDPAGT GSVNAGAGTS ENSCGLNGEC DDGSKGLEGD 240 KYEPKRKRRK TETATGVSIS REGVQEPRVL VQSSTDSEIV GDGFRWRKYG QKTVKGNPYP 300 RTYYRCTGIK CSVRKHVERV SDDPRAFITT YEGKHSHEMP LKRTKLAALE PDSQAPPTGD 360 RQ* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 5e-29 | 81 | 340 | 8 | 77 | Probable WRKY transcription factor 4 |
2lex_A | 5e-29 | 81 | 340 | 8 | 77 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 244 | 249 | KRKRRK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Regulates trichome development, production of mucilage and tannin in seed coats, and maybe root hair development. {ECO:0000269|PubMed:12084832}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0804s0040.7.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Not induced by salicylic acid or wounding. {ECO:0000269|PubMed:12084832}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EF179608 | 1e-178 | EF179608.1 (Populus tomentosa x P. bolleana) x P. tomentosa clone 01 WRKY transcription factor pseudogene, partial sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006381519.1 | 0.0 | WRKY transcription factor 44 | ||||
Refseq | XP_024459754.1 | 0.0 | WRKY transcription factor 44 | ||||
Refseq | XP_024459755.1 | 0.0 | WRKY transcription factor 44 | ||||
Refseq | XP_024459756.1 | 0.0 | WRKY transcription factor 44 | ||||
Refseq | XP_024459758.1 | 0.0 | WRKY transcription factor 44 | ||||
Refseq | XP_024459759.1 | 0.0 | WRKY transcription factor 44 | ||||
Swissprot | Q9ZUU0 | 6e-76 | WRK44_ARATH; WRKY transcription factor 44 | ||||
TrEMBL | U5GAH7 | 0.0 | U5GAH7_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0006s13550.1 | 0.0 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G37260.2 | 4e-77 | WRKY family protein |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0804s0040.7.p |