PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0804s0040.6.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family WRKY
Protein Properties Length: 400aa    MW: 44311.8 Da    PI: 8.898
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0804s0040.6.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY104.84.5e-33118174360
                             -SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
                    WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                             DgynWrKYGqK+vkgse+prsYY+Ct+++Cpvkkkvers  d+++ ei+Y+geHnh+k
  SapurV1A.0804s0040.6.p 118 DGYNWRKYGQKQVKGSEYPRSYYKCTYPNCPVKKKVERSF-DGQIAEIVYKGEHNHSK 174
                             9***************************************.***************85 PP
2WRKY97.86.9e-31318375259
                             --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                    WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                              Dg++WrKYGqK+vkg+++pr YYrCt  +C+v+k+ver ++dp+++++tYeg+H he
  SapurV1A.0804s0040.6.p 318 GDGFRWRKYGQKTVKGNPYPRTYYRCTGIKCSVRKHVERVSDDPRAFITTYEGKHSHE 375
                             6********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.9E-29104175IPR003657WRKY domain
SuperFamilySSF1182907.72E-26115175IPR003657WRKY domain
SMARTSM007742.1E-36116174IPR003657WRKY domain
PROSITE profilePS5081123.617118175IPR003657WRKY domain
PfamPF031061.2E-25118172IPR003657WRKY domain
Gene3DG3DSA:2.20.25.804.3E-32302377IPR003657WRKY domain
SuperFamilySSF1182902.62E-27311377IPR003657WRKY domain
PROSITE profilePS5081133.029312377IPR003657WRKY domain
SMARTSM007745.5E-33317376IPR003657WRKY domain
PfamPF031061.9E-24319374IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 400 aa     Download sequence    Send to blast
MVSRKTPPIF KLFCHGSLAT AVCIDDFCHC NANISLDQGN FNGNSQQMSQ PVETRPQRTK  60
QDKRNFSSQL TTSNLHQNIP SHAEAEQTSE TLRLTSLNQE EDPKTSSHAS NGDRPSFDGY  120
NWRKYGQKQV KGSEYPRSYY KCTYPNCPVK KKVERSFDGQ IAEIVYKGEH NHSKPQPPRH  180
NSSGTQGLGA VSDRNGPDRN STPIWSNQLN ERNEGSGGRE ENLNDIGLPV HSIYQGKAPP  240
SYDPAGTGSV NAGAGTSENS CGLNGECDDG SKGLEGDKYE PKRKRRKTET ATGVSISREG  300
VQEPRVLVQS STDSEIVGDG FRWRKYGQKT VKGNPYPRTY YRCTGIKCSV RKHVERVSDD  360
PRAFITTYEG KHSHEMPLKR TKLAALEPDS QAPPTGDRQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-28118377877Probable WRKY transcription factor 4
2lex_A1e-28118377877Probable WRKY transcription factor 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1281286KRKRRK
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Regulates trichome development, production of mucilage and tannin in seed coats, and maybe root hair development. {ECO:0000269|PubMed:12084832}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0804s0040.6.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Not induced by salicylic acid or wounding. {ECO:0000269|PubMed:12084832}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1796081e-178EF179608.1 (Populus tomentosa x P. bolleana) x P. tomentosa clone 01 WRKY transcription factor pseudogene, partial sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006381519.10.0WRKY transcription factor 44
RefseqXP_024459754.10.0WRKY transcription factor 44
RefseqXP_024459755.10.0WRKY transcription factor 44
RefseqXP_024459756.10.0WRKY transcription factor 44
RefseqXP_024459758.10.0WRKY transcription factor 44
RefseqXP_024459759.10.0WRKY transcription factor 44
SwissprotQ9ZUU04e-75WRK44_ARATH; WRKY transcription factor 44
TrEMBLA0A3S9LK430.0A0A3S9LK43_POPTO; WRKY family transcription factor 44
TrEMBLU5GAH70.0U5GAH7_POPTR; Uncharacterized protein
STRINGPOPTR_0006s13550.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37260.23e-76WRKY family protein
Publications ? help Back to Top
  1. Kim K,Jiang K,Teng SL,Feldman LJ,Huang H
    Using biologically interrelated experiments to identify pathway genes in Arabidopsis.
    Bioinformatics, 2012. 28(6): p. 815-22
    [PMID:22271267]
  2. Simon M, et al.
    Tissue-specific profiling reveals transcriptome alterations in Arabidopsis mutants lacking morphological phenotypes.
    Plant Cell, 2013. 25(9): p. 3175-85
    [PMID:24014549]
  3. Ranocha P,Francoz E,Burlat V,Dunand C
    Expression of PRX36, PMEI6 and SBT1.7 is controlled by complex transcription factor regulatory networks for proper seed coat mucilage extrusion.
    Plant Signal Behav, 2014. 9(11): p. e977734
    [PMID:25531128]
  4. Verweij W, et al.
    Functionally Similar WRKY Proteins Regulate Vacuolar Acidification in Petunia and Hair Development in Arabidopsis.
    Plant Cell, 2016. 28(3): p. 786-803
    [PMID:26977085]
  5. Gonzalez A, et al.
    TTG2 controls the developmental regulation of seed coat tannins in Arabidopsis by regulating vacuolar transport steps in the proanthocyanidin pathway.
    Dev. Biol., 2016. 419(1): p. 54-63
    [PMID:27046632]
  6. Hassani-Pak K, et al.
    Developing integrated crop knowledge networks to advance candidate gene discovery.
    Appl Transl Genom, 2016. 11: p. 18-26
    [PMID:28018846]