PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0804s0040.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | WRKY | ||||||||
Protein Properties | Length: 479aa MW: 52633.2 Da PI: 9.6549 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 104.5 | 5.8e-33 | 197 | 253 | 3 | 60 |
-SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 DgynWrKYGqK+vkgse+prsYY+Ct+++Cpvkkkvers d+++ ei+Y+geHnh+k SapurV1A.0804s0040.2.p 197 DGYNWRKYGQKQVKGSEYPRSYYKCTYPNCPVKKKVERSF-DGQIAEIVYKGEHNHSK 253 9***************************************.***************85 PP | |||||||
2 | WRKY | 97.5 | 8.9e-31 | 397 | 454 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 Dg++WrKYGqK+vkg+++pr YYrCt +C+v+k+ver ++dp+++++tYeg+H he SapurV1A.0804s0040.2.p 397 GDGFRWRKYGQKTVKGNPYPRTYYRCTGIKCSVRKHVERVSDDPRAFITTYEGKHSHE 454 6********************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 2.5E-29 | 183 | 254 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.01E-25 | 194 | 254 | IPR003657 | WRKY domain |
SMART | SM00774 | 2.1E-36 | 195 | 253 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 23.617 | 197 | 254 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.6E-25 | 197 | 251 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 5.8E-32 | 381 | 456 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 3.4E-27 | 390 | 456 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 33.029 | 391 | 456 | IPR003657 | WRKY domain |
SMART | SM00774 | 5.5E-33 | 396 | 455 | IPR003657 | WRKY domain |
Pfam | PF03106 | 2.4E-24 | 398 | 453 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 479 aa Download sequence Send to blast |
MEIKESERVV IAKPVASRPS CSNFRSFSEL LAGAINSSPS DVFPETEVAA IRPKTERFRP 60 MVNRAPGALV SSQAELSGTA VSNSFNKVSS TDSKSTIIYK PQAKLVSKAT VSLLANMGNF 120 NGNSQQMSQP VETRPQRTKQ DKRNFSSQLT TSNLHQNIPS HAEAEQTSET LRLTSLNQEE 180 DPKTSSHASN GDRPSFDGYN WRKYGQKQVK GSEYPRSYYK CTYPNCPVKK KVERSFDGQI 240 AEIVYKGEHN HSKPQPPRHN SSGTQGLGAV SDRNGPDRNS TPIWSNQLNE RNEGSGGREE 300 NLNDIGLPVH SIYQGKAPPS YDPAGTGSVN AGAGTSENSC GLNGECDDGS KGLEGDKYEP 360 KRKRRKTETA TGVSISREGV QEPRVLVQSS TDSEIVGDGF RWRKYGQKTV KGNPYPRTYY 420 RCTGIKCSVR KHVERVSDDP RAFITTYEGK HSHEMPLKRT KLAALEPDSQ APPTGDRQ* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 8e-29 | 197 | 456 | 8 | 77 | Probable WRKY transcription factor 4 |
2lex_A | 8e-29 | 197 | 456 | 8 | 77 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 360 | 365 | KRKRRK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0804s0040.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EF179608 | 1e-178 | EF179608.1 (Populus tomentosa x P. bolleana) x P. tomentosa clone 01 WRKY transcription factor pseudogene, partial sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006381519.1 | 0.0 | WRKY transcription factor 44 | ||||
Refseq | XP_024459754.1 | 0.0 | WRKY transcription factor 44 | ||||
Refseq | XP_024459755.1 | 0.0 | WRKY transcription factor 44 | ||||
Refseq | XP_024459756.1 | 0.0 | WRKY transcription factor 44 | ||||
Refseq | XP_024459758.1 | 0.0 | WRKY transcription factor 44 | ||||
Refseq | XP_024459759.1 | 0.0 | WRKY transcription factor 44 | ||||
TrEMBL | U5GAH7 | 0.0 | U5GAH7_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0006s13550.1 | 0.0 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G37260.1 | 1e-109 | WRKY family protein |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0804s0040.2.p |