PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0804s0040.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family WRKY
Protein Properties Length: 516aa    MW: 56680.9 Da    PI: 9.3363
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0804s0040.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY104.36.4e-33234290360
                             -SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
                    WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                             DgynWrKYGqK+vkgse+prsYY+Ct+++Cpvkkkvers  d+++ ei+Y+geHnh+k
  SapurV1A.0804s0040.1.p 234 DGYNWRKYGQKQVKGSEYPRSYYKCTYPNCPVKKKVERSF-DGQIAEIVYKGEHNHSK 290
                             9***************************************.***************85 PP
2WRKY97.39.9e-31434491259
                             --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                    WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                              Dg++WrKYGqK+vkg+++pr YYrCt  +C+v+k+ver ++dp+++++tYeg+H he
  SapurV1A.0804s0040.1.p 434 GDGFRWRKYGQKTVKGNPYPRTYYRCTGIKCSVRKHVERVSDDPRAFITTYEGKHSHE 491
                             6********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.8E-29220291IPR003657WRKY domain
SuperFamilySSF1182901.12E-25231291IPR003657WRKY domain
SMARTSM007742.1E-36232290IPR003657WRKY domain
PfamPF031061.7E-25234288IPR003657WRKY domain
PROSITE profilePS5081123.617234291IPR003657WRKY domain
Gene3DG3DSA:2.20.25.806.4E-32418493IPR003657WRKY domain
SuperFamilySSF1182903.79E-27427493IPR003657WRKY domain
PROSITE profilePS5081133.029428493IPR003657WRKY domain
SMARTSM007745.5E-33433492IPR003657WRKY domain
PfamPF031062.7E-24435490IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 516 aa     Download sequence    Send to blast
MEIKESERVV IAKPVASRPS CSNFRSFSEL LAGAINSSPS DVFPETEVAA IRPKTERFRP  60
MVNRAPGALV SSQAELSGTA VSNSFNKVSS TDSKSTIIYK PQAKLVSKAT VSLLANMVSR  120
KTPPIFKLFC HGSLATAVCI DDFCHCNANI SLDQGNFNGN SQQMSQPVET RPQRTKQDKR  180
NFSSQLTTSN LHQNIPSHAE AEQTSETLRL TSLNQEEDPK TSSHASNGDR PSFDGYNWRK  240
YGQKQVKGSE YPRSYYKCTY PNCPVKKKVE RSFDGQIAEI VYKGEHNHSK PQPPRHNSSG  300
TQGLGAVSDR NGPDRNSTPI WSNQLNERNE GSGGREENLN DIGLPVHSIY QGKAPPSYDP  360
AGTGSVNAGA GTSENSCGLN GECDDGSKGL EGDKYEPKRK RRKTETATGV SISREGVQEP  420
RVLVQSSTDS EIVGDGFRWR KYGQKTVKGN PYPRTYYRCT GIKCSVRKHV ERVSDDPRAF  480
ITTYEGKHSH EMPLKRTKLA ALEPDSQAPP TGDRQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-28234493877Probable WRKY transcription factor 4
2lex_A1e-28234493877Probable WRKY transcription factor 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1397402KRKRRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0804s0040.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1796081e-178EF179608.1 (Populus tomentosa x P. bolleana) x P. tomentosa clone 01 WRKY transcription factor pseudogene, partial sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006381519.10.0WRKY transcription factor 44
RefseqXP_024459754.10.0WRKY transcription factor 44
RefseqXP_024459755.10.0WRKY transcription factor 44
RefseqXP_024459756.10.0WRKY transcription factor 44
RefseqXP_024459758.10.0WRKY transcription factor 44
RefseqXP_024459759.10.0WRKY transcription factor 44
TrEMBLA0A3S9LK430.0A0A3S9LK43_POPTO; WRKY family transcription factor 44
TrEMBLU5GAH70.0U5GAH7_POPTR; Uncharacterized protein
STRINGPOPTR_0006s13550.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF67903450
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37260.11e-97WRKY family protein