PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | SapurV1A.0787s0140.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
|
||||||||
Family | WRKY | ||||||||
Protein Properties | Length: 191aa MW: 21234 Da PI: 6.7589 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 22.6 | 2.2e-07 | 157 | 170 | 1 | 14 |
---SS-EEEEEEE- CS WRKY 1 ldDgynWrKYGqKe 14 ldDgy+WrKYGqK+ SapurV1A.0787s0140.2.p 157 LDDGYKWRKYGQKV 170 59***********7 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 5.5E-9 | 142 | 178 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.83E-6 | 150 | 178 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 10.189 | 152 | 190 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:1901141 | Biological Process | regulation of lignin biosynthetic process | ||||
GO:1904369 | Biological Process | positive regulation of sclerenchyma cell differentiation | ||||
GO:0001046 | Molecular Function | core promoter sequence-specific DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 191 aa Download sequence Send to blast |
MAATSQATLN QQPLFEDQDM PPQMGFFSFP SQYLTYPQLA SCQQSLKGFI IPPSLAVDAP 60 CTTNLTETLL LSSATNKQRE EDTIASDLEG PHLLSLQRSS ANLWAWGEVN DCSNSKRSGS 120 GGDHLGVSTI KMKKIKAWRK VREPRFCFKT LSEVDVLDDG YKWRKYGQKV ELLSLHARQL 180 SREETCGEVS * |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | SapurV1A.0787s0140.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | EF145293 | 0.0 | EF145293.1 Populus trichocarpa clone WS01122_O17 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_011021959.1 | 1e-100 | PREDICTED: probable WRKY transcription factor 13 | ||||
Refseq | XP_011021960.1 | 1e-100 | PREDICTED: probable WRKY transcription factor 13 | ||||
Refseq | XP_011021961.1 | 1e-100 | PREDICTED: probable WRKY transcription factor 13 | ||||
Refseq | XP_011021962.1 | 1e-100 | PREDICTED: probable WRKY transcription factor 13 | ||||
Refseq | XP_011021963.1 | 1e-100 | PREDICTED: probable WRKY transcription factor 13 | ||||
Swissprot | Q9SVB7 | 2e-23 | WRK13_ARATH; Probable WRKY transcription factor 13 | ||||
TrEMBL | A9PAR4 | 4e-97 | A9PAR4_POPTR; WRKY family protein | ||||
STRING | POPTR_0007s06930.1 | 1e-96 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G39410.1 | 5e-23 | WRKY DNA-binding protein 13 |
Link Out ? help Back to Top | |
---|---|
Phytozome | SapurV1A.0787s0140.2.p |