PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0772s0170.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family C2H2
Protein Properties Length: 385aa    MW: 42831.1 Da    PI: 8.6495
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0772s0170.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.69.4e-05147170123
                             EEETTTTEEESSHHHHHHHHHH.T CS
                 zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                             ++C+ Cg+ F  + +L++H+ t H
  SapurV1A.0772s0170.1.p 147 FPCTACGEIFQKPQLLEQHQATkH 170
                             89******************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.598147175IPR007087Zinc finger, C2H2
PROSITE patternPS000280149170IPR007087Zinc finger, C2H2
SuperFamilySSF563997.0E-12172383No hitNo description
Gene3DG3DSA:3.90.228.104.7E-5318383IPR012317Poly(ADP-ribose) polymerase, catalytic domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003950Molecular FunctionNAD+ ADP-ribosyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 385 aa     Download sequence    Send to blast
MAPNIGSVFN KFLSLFVLLL HLGCFIFTSK LNDHHPNRPP PIKKRKKVSP LAPISSSPSR  60
LKPHKALSSS WSYLKSIFSS KPSKTQSKSG TQTLTSARSS QQSIVTMIPP ETHLSELPPR  120
KNSSTGSCEE SDIAADHHFF PLRNDIFPCT ACGEIFQKPQ LLEQHQATKH AVTQLLDGDT  180
GKNIVHIIFK TGWSCKEKSP EIHRILKIHN SPKILSRFEE YREFVKAKAA SNSKRRDERC  240
FADGNELLRF YCSTFMCDLG LNDQDSSICN QQYCSVCGVI KSGFSPKMDG ISTLSTSWRA  300
HTAIPEEIEE EFKFMNVKRA MLVCRVVAGR VGCELDEDVD KQDGGADSVL GRGGSGVHTR  360
LDEQELLVFN PRAVLPCFVI VYTV*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14246KKRKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0772s0170.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002314116.30.0uncharacterized protein LOC7468574
TrEMBLA0A2K1Z2M60.0A0A2K1Z2M6_POPTR; Uncharacterized protein
STRINGPOPTR_0001s25700.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF106682936
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G29660.11e-115C2H2 family protein