PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SapurV1A.0767s0100.6.p

Organism

Salix purpurea

Taxonomic ID

77065

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix

Family

FAR1

Protein Properties

Length: 567aa MW: 65853.2 Da PI: 8.6409

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SapurV1A.0767s0100.6.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	21.6	7.1e-07	1	26	66	91
FAR1 66 lkvkkekdgkwevtkleleHnHelap 91 ++vk++ dgkw+++++++eHnHel p SapurV1A.0767s0100.6.p 1 MHVKRRPDGKWVIHSFVKEHNHELLP 26 89*********************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF10551	1.1E-31	124	215	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.322	404	440	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	1.4E-7	415	442	IPR006564	Zinc finger, PMZ-type
Pfam	PF04434	7.6E-5	416	439	IPR007527	Zinc finger, SWIM-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009585	Biological Process	red, far-red light phototransduction
GO:0010218	Biological Process	response to far red light
GO:0042753	Biological Process	positive regulation of circadian rhythm
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 567 aa Download sequence Send to blast
MHVKRRPDGK WVIHSFVKEH NHELLPAQAV SEQTRKMYAA MAQQFAEYKN VVGLKNDPKN 60 PFDKGWNLGL EAGETKILLD FFTRMQNMNS NFFYAVDLGE DQRLKNLIWA DAKSRHDYSN 120 FSDVVNFDTT YVRNKYKMPL ALFVGVNQHY QFMLLGCALV SDESAATYSW LMQTWLRAMG 180 GQTPKVIITD QDKVLKQVIS EVFPNAHHCF CLWNVLGKVS ENLGNVIKQN RNFMAKFDKC 240 IFRSWTENEF GKRWLKILDR FELRENEWMQ SLYEDREQWV PIYMRGAFLA GMSTALRSES 300 INSYFDKYVH KKTTVQEFVR QYESILQDRY EEEAKADSDT WNKQPALKSP SPLEKSVSGM 360 YTHAVFKKFQ VEVLGVVACH PKMESQDETS VSFRVQDLEK EQDFTVLWNQ MRLEVSCICR 420 LYEYKGYLCR HALVVLQMCQ QSAIPSQYIL KRWTKDAKSR HLVGEECEQV QSRVQRYNDL 480 CQRALKLSEE ASLSQESYSM AFRALEEAFG NCIGMNNSNK NLVEAGTSAT HGLLCIEDDN 540 QNRSVTKTIK KKNQTKKRKV GGQKQI*

Sequence ? help Back to Top

Protein Sequence Length: 567 aa Download sequence Send to blast

MHVKRRPDGK WVIHSFVKEH NHELLPAQAV SEQTRKMYAA MAQQFAEYKN VVGLKNDPKN  60
PFDKGWNLGL EAGETKILLD FFTRMQNMNS NFFYAVDLGE DQRLKNLIWA DAKSRHDYSN  120
FSDVVNFDTT YVRNKYKMPL ALFVGVNQHY QFMLLGCALV SDESAATYSW LMQTWLRAMG  180
GQTPKVIITD QDKVLKQVIS EVFPNAHHCF CLWNVLGKVS ENLGNVIKQN RNFMAKFDKC  240
IFRSWTENEF GKRWLKILDR FELRENEWMQ SLYEDREQWV PIYMRGAFLA GMSTALRSES  300
INSYFDKYVH KKTTVQEFVR QYESILQDRY EEEAKADSDT WNKQPALKSP SPLEKSVSGM  360
YTHAVFKKFQ VEVLGVVACH PKMESQDETS VSFRVQDLEK EQDFTVLWNQ MRLEVSCICR  420
LYEYKGYLCR HALVVLQMCQ QSAIPSQYIL KRWTKDAKSR HLVGEECEQV QSRVQRYNDL  480
CQRALKLSEE ASLSQESYSM AFRALEEAFG NCIGMNNSNK NLVEAGTSAT HGLLCIEDDN  540
QNRSVTKTIK KKNQTKKRKV GGQKQI*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that recognizes and binds to the DNA consensus sequence 5'-CACGCGC-3'. Activates the expression of FHY1 and FHL involved in light responses. When associated with PHYA, protects it from being recognized and degraded by the COP1/SPA complex. Positive regulator of chlorophyll biosynthesis via the activation of HEMB1 gene expression. {ECO:0000269\|PubMed:11889039, ECO:0000269\|PubMed:12753585, ECO:0000269\|PubMed:17012604, ECO:0000269\|PubMed:18033885, ECO:0000269\|PubMed:18715961, ECO:0000269\|PubMed:22634759}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00078	ChIP-seq	Transfer from AT3G22170	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	SapurV1A.0767s0100.6.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Down-regulated after exposure to far-red light. Subject to a negative feedback regulation by PHYA signaling. Up-regulated by white light. {ECO:0000269\|PubMed:11889039, ECO:0000269\|PubMed:18033885, ECO:0000269\|PubMed:22634759}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EF148105	5e-74	EF148105.1 Populus trichocarpa clone WS0127_J20 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024459456.1	0.0	protein FAR-RED ELONGATED HYPOCOTYL 3 isoform X1
Refseq	XP_024459457.1	0.0	protein FAR-RED ELONGATED HYPOCOTYL 3 isoform X1
Refseq	XP_024459458.1	0.0	protein FAR-RED ELONGATED HYPOCOTYL 3 isoform X1
Refseq	XP_024459459.1	0.0	protein FAR-RED ELONGATED HYPOCOTYL 3 isoform X1
Refseq	XP_024459460.1	0.0	protein FAR-RED ELONGATED HYPOCOTYL 3 isoform X1
Refseq	XP_024459461.1	0.0	protein FAR-RED ELONGATED HYPOCOTYL 3 isoform X2
Swissprot	Q9LIE5	0.0	FHY3_ARATH; Protein FAR-RED ELONGATED HYPOCOTYL 3
TrEMBL	A0A2K1ZVK4	0.0	A0A2K1ZVK4_POPTR; Uncharacterized protein
TrEMBL	B9HD60	0.0	B9HD60_POPTR; Uncharacterized protein
STRING	POPTR_0006s02150.1	0.0	(Populus trichocarpa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G22170.2	0.0	far-red elongated hypocotyls 3

Link Out ? help Back to Top
Phytozome	SapurV1A.0767s0100.6.p

Publications ? help Back to Top
Chang N,Gao Y,Zhao L,Liu X,Gao H Arabidopsis FHY3/CPD45 regulates far-red light signaling and chloroplast division in parallel. Sci Rep, 2015. 5: p. 9612 [PMID:25872642] Wang C, et al. SCAB3 Is Required for Reorganization of Actin Filaments during Light Quality Changes. J Genet Genomics, 2015. 42(4): p. 161-8 [PMID:25953354] Wang W, et al. A pair of light signaling factors FHY3 and FAR1 regulates plant immunity by modulating chlorophyll biosynthesis. J Integr Plant Biol, 2016. 58(1): p. 91-103 [PMID:25989254] Ma L, et al. Arabidopsis FHY3 and FAR1 Regulate Light-Induced myo-Inositol Biosynthesis and Oxidative Stress Responses by Transcriptional Activation of MIPS1. Mol Plant, 2016. 9(4): p. 541-57 [PMID:26714049] Siddiqui H,Khan S,Rhodes BM,Devlin PF FHY3 and FAR1 Act Downstream of Light Stable Phytochromes. Front Plant Sci, 2016. 7: p. 175 [PMID:26941752] Li D, et al. FAR-RED ELONGATED HYPOCOTYL3 activates SEPALLATA2 but inhibits CLAVATA3 to regulate meristem determinacy and maintenance in Arabidopsis. Proc. Natl. Acad. Sci. U.S.A., 2016. 113(33): p. 9375-80 [PMID:27469166] Liu L,Li B,Liu X FAR-RED ELONGATED HYPOCOTYL3 promotes floral meristem determinacy in Arabidopsis. Plant Signal Behav, 2016. 11(10): p. e1238545 [PMID:27660915] Ma L,Xue N,Fu X,Zhang H,Li G Arabidopsis thaliana FAR-RED ELONGATED HYPOCOTYLS3 (FHY3) and FAR-RED-IMPAIRED RESPONSE1 (FAR1) modulate starch synthesis in response to light and sugar. New Phytol., 2017. 213(4): p. 1682-1696 [PMID:27859295] Liu Y, et al. Light and Ethylene Coordinately Regulate the Phosphate Starvation Response through Transcriptional Regulation of PHOSPHATE STARVATION RESPONSE1. Plant Cell, 2017. 29(9): p. 2269-2284 [PMID:28842534] Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]