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Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
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| TF ID |
SapurV1A.0762s0100.2.p |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
|
| Family |
BBR-BPC |
| Protein Properties |
Length: 337aa MW: 37277.8 Da PI: 9.7513 |
| Description |
BBR-BPC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| SapurV1A.0762s0100.2.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GAGA_bind | 386.1 | 5.5e-118 | 1 | 336 | 1 | 301 |
GAGA_bind 1 mdddgsre..rnkg.yye.........paaslkenlglqlmssiaerdakirernlalsekkaavaerdmaflqrdkalaernkalv 75
mdd +re r+k+ +y+ p++s+k q+m+++aerda+i+ern+alsekkaavaerdmaflqrd+a+aern+al+
SapurV1A.0762s0100.2.p 1 MDDGVHREngRHKAeQYKaaqgqwlmqPQPSMK-----QIMAIMAERDAAIHERNIALSEKKAAVAERDMAFLQRDSAIAERNNALL 82
8998888889***99999776666654445666.....************************************************* PP
GAGA_bind 76 erdnkllalllvensla....salpvgvqvlsgtksidslqq.lse.pqledsavelreeeklealpieeaaeeakekkkkkkrqra 156
erdn++++l+++ens + s++++g++ ++g+k++++ qq +++ p+++++a+++re++ +a pi+ +a+e++k++ r+
SapurV1A.0762s0100.2.p 83 ERDNAIATLQYRENSFTsantSSSAPGYHNSRGVKHMHHQQQhIHHlPHMNEDAYGTREMQADDAVPISP---VASEAAKPR---RG 163
**************9887887788899**************955559******************99876...445555555...34 PP
GAGA_bind 157 kkpkekkakkkkkksekskkkvkkesader............................skaekksidlvlngvslDestlPvPvCsC 215
++pk ka+ +kk +ks +kvk+es+d + sk+++k +dl+ln+v++De+t+P+PvCsC
SapurV1A.0762s0100.2.p 164 RQPKGAKATPSNKKISKSPRKVKRESEDLNmfgksnewkdggegmngggddlnkqleaSKSDWKGQDLGLNQVAFDETTMPAPVCSC 250
44444444444444555566666666664457777889999********************************************** PP
GAGA_bind 216 tGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301
tG rqCYkWGnGGWqS+CCtt++S+yPLP+++++r+aR++grKmS+gaf+klL++LaaeG dlsnpvDLkdhWAkHGtn+++ti+
SapurV1A.0762s0100.2.p 251 TGFFRQCYKWGNGGWQSSCCTTALSMYPLPAVPNKRHARVGGRKMSGGAFSKLLSRLAAEGQDLSNPVDLKDHWAKHGTNRYITIK 336
*************************************************************************************8 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 337 aa
Download sequence Send
to blast |
MDDGVHRENG RHKAEQYKAA QGQWLMQPQP SMKQIMAIMA ERDAAIHERN IALSEKKAAV 60
AERDMAFLQR DSAIAERNNA LLERDNAIAT LQYRENSFTS ANTSSSAPGY HNSRGVKHMH 120
HQQQHIHHLP HMNEDAYGTR EMQADDAVPI SPVASEAAKP RRGRQPKGAK ATPSNKKISK 180
SPRKVKRESE DLNMFGKSNE WKDGGEGMNG GGDDLNKQLE ASKSDWKGQD LGLNQVAFDE 240
TTMPAPVCSC TGFFRQCYKW GNGGWQSSCC TTALSMYPLP AVPNKRHARV GGRKMSGGAF 300
SKLLSRLAAE GQDLSNPVDL KDHWAKHGTN RYITIK*
|
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269|PubMed:14731261}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | FJ982263 | 0.0 | FJ982263.1 Populus trichocarpa GAGA-binding transcriptional activator (BBR/BPC6) mRNA, complete cds. |
