PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0755s0130.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 257aa MW: 29023.2 Da PI: 5.2728 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 62.9 | 4.6e-20 | 58 | 109 | 5 | 56 |
SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 5 ttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 ++f++eq++ Le++Fe++ ++ +++++LA++lgL+ rqV +WFqNrRa++k SapurV1A.0755s0130.1.p 58 RRFSDEQVRSLESVFESETKLEPRKKTQLARELGLEPRQVAIWFQNRRARWK 109 58*************************************************9 PP | |||||||
2 | HD-ZIP_I/II | 120.3 | 1e-38 | 57 | 145 | 3 | 91 |
HD-ZIP_I/II 3 krrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89 rr+s+eqv++LE+ Fe+e+kLep++K++lareLgl+prqva+WFqnrRAR+ktkq+E++y++Lk++yd l+++ e+L++e e+L SapurV1A.0755s0130.1.p 57 TRRFSDEQVRSLESVFESETKLEPRKKTQLARELGLEPRQVAIWFQNRRARWKTKQMEQKYKTLKASYDDLASSYESLKNERESLLL 143 69*********************************************************************************9986 PP HD-ZIP_I/II 90 el 91 + SapurV1A.0755s0130.1.p 144 QF 145 65 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.88E-18 | 50 | 113 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.524 | 51 | 111 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.1E-17 | 54 | 115 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 2.4E-20 | 58 | 118 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 2.0E-17 | 58 | 109 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.93E-16 | 58 | 112 | No hit | No description |
PRINTS | PR00031 | 4.8E-6 | 82 | 91 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 86 | 109 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 4.8E-6 | 91 | 107 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 1.6E-11 | 111 | 152 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 257 aa Download sequence Send to blast |
MSHQKLMGGV VDFDQVIIAG DQTEAAERLA CFDDGDQQQL EKVSRRKKKK KGGKMNTRRF 60 SDEQVRSLES VFESETKLEP RKKTQLAREL GLEPRQVAIW FQNRRARWKT KQMEQKYKTL 120 KASYDDLASS YESLKNERES LLLQFQTVSD QLGNPCEASE RCDRGIDEVL HDGITNLEAA 180 APQGLDNNRT IMASVCDDLS MENGQSSDKG QGFLYTGSPE YNDGTLASAY EKSYSSGSGA 240 QFDLSWSSSY WFNFRT* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 44 | 50 | RRKKKKK |
2 | 103 | 111 | RRARWKTKQ |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0755s0130.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC209184 | 1e-139 | AC209184.1 Populus trichocarpa clone POP031-J16, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002317813.2 | 1e-143 | homeobox-leucine zipper protein ATHB-12 | ||||
TrEMBL | A0A2K1Y7S8 | 1e-142 | A0A2K1Y7S8_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0012s03080.1 | 1e-143 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF12005 | 26 | 35 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G46680.1 | 4e-42 | homeobox 7 |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0755s0130.1.p |