PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0739s0030.3.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family G2-like
Protein Properties Length: 582aa    MW: 63235.6 Da    PI: 6.6856
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0739s0030.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like90.31.7e-28110163155
                 G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                             kpr++W+ eLH++Fv av+qL G++kA+Pk+ilelm+v+gLt+e+v+SHLQkYRl
  SapurV1A.0739s0030.3.p 110 KPRVVWSVELHQQFVAAVNQL-GIDKAVPKKILELMNVPGLTREKVASHLQKYRL 163
                             79*******************.********************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011013.087144IPR001789Signal transduction response regulator, receiver domain
SuperFamilySSF521722.34E-6547IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23001.5E-10551No hitNo description
PROSITE profilePS5129410.737107166IPR017930Myb domain
SuperFamilySSF466891.27E-19107167IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.1E-30109168IPR009057Homeodomain-like
TIGRFAMsTIGR015572.6E-24110163IPR006447Myb domain, plants
PfamPF002492.9E-7112162IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009873Biological Processethylene-activated signaling pathway
GO:0010082Biological Processregulation of root meristem growth
GO:0010119Biological Processregulation of stomatal movement
GO:0010150Biological Processleaf senescence
GO:0071368Biological Processcellular response to cytokinin stimulus
GO:0080113Biological Processregulation of seed growth
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 582 aa     Download sequence    Send to blast
MSCAVMSADD GKNVVMKGVT HGACDYLIKP IRIEALKNIW QHVVRKKKKN EWKDLEQSGS  60
VEEGGDRQQK QSEDADYSSS ANEGSWKNSK RRKDEEEEVD ERDDTSTLKK PRVVWSVELH  120
QQFVAAVNQL GIDKAVPKKI LELMNVPGLT REKVASHLQK YRLYLRRLSG VSQHQSGMGN  180
SFISTQEATY GSLSSLNGLD LQTLAAASQI PAQSLATLQA AGLGRSTAKP RMPMPIVDQR  240
NLFSFENPKL RFGEGQQQHL NNGKQINLLH GIPTTMEPKQ LANMHHSAQS LGSMNMQLNA  300
HGDQSGSLLM QMSQQQSRGQ ILNEATSSQV PRLPSSIGQP IVNNALASGV LARNGLAESG  360
RGTGFNPVSQ SSSTMNFPLN TTAELTATSF ALGSAPGVPS LTSKGMFPEE ISSEIKGPGG  420
FIMPSYDIFS DLQHHRSHDW ELQNAGMTFN GSQQSNSLQS NVDVASSVLA HQGFSSSQSN  480
GQGRNISAVG KPMFSAGDAT DHVNAQSLGQ PLNNFFAENL VRVKTERVPD ASLQTTLFNE  540
QFGQEDLMSA LLKQQQQQQA GIGPAENEFD FDGYSLDNIP V*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A2e-21109169464ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins. Involved in the expression of nuclear genes for components of mitochondrial complex I. Promotes cytokinin-mediated leaf longevity. Involved in the ethylene signaling pathway in an ETR1-dependent manner and in the cytokinin signaling pathway. {ECO:0000269|PubMed:11370868, ECO:0000269|PubMed:11574878, ECO:0000269|PubMed:15282545, ECO:0000269|PubMed:16407152}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00054PBMTransfer from AT4G16110Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0739s0030.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFN9081390.0FN908139.1 Populus x canadensis mRNA for putative B-type response regulator 13 (rr13 gene), cultivar Dorskamp.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024466703.10.0two-component response regulator ARR2 isoform X2
SwissprotQ9ZWJ91e-157ARR2_ARATH; Two-component response regulator ARR2
TrEMBLA0A2K1YLL30.0A0A2K1YLL3_POPTR; Two-component response regulator
STRINGPOPTR_0008s22990.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16110.11e-145response regulator 2
Publications ? help Back to Top
  1. Takahashi N, et al.
    Cytokinins control endocycle onset by promoting the expression of an APC/C activator in Arabidopsis roots.
    Curr. Biol., 2013. 23(18): p. 1812-7
    [PMID:24035544]
  2. Ge XM, et al.
    Heterotrimeric G protein mediates ethylene-induced stomatal closure via hydrogen peroxide synthesis in Arabidopsis.
    Plant J., 2015. 82(1): p. 138-50
    [PMID:25704455]
  3. Takahashi N,Umeda M
    Cytokinins promote onset of endoreplication by controlling cell cycle machinery.
    Plant Signal Behav, 2014. 9(8): p. e29396
    [PMID:25763620]
  4. Kobayashi K, et al.
    Shoot Removal Induces Chloroplast Development in Roots via Cytokinin Signaling.
    Plant Physiol., 2017. 173(4): p. 2340-2355
    [PMID:28193764]
  5. Arnaud D, et al.
    Cytokinin-Mediated Regulation of Reactive Oxygen Species Homeostasis Modulates Stomatal Immunity in Arabidopsis.
    Plant Cell, 2017. 29(3): p. 543-559
    [PMID:28254779]
  6. Zhang TQ, et al.
    A Two-Step Model for de Novo Activation of WUSCHEL during Plant Shoot Regeneration.
    Plant Cell, 2017. 29(5): p. 1073-1087
    [PMID:28389585]
  7. Meng WJ, et al.
    Type-B ARABIDOPSIS RESPONSE REGULATORs Specify the Shoot Stem Cell Niche by Dual Regulation of WUSCHEL.
    Plant Cell, 2017. 29(6): p. 1357-1372
    [PMID:28576846]
  8. Zhang F,May A,Irish VF
    Type-B ARABIDOPSIS RESPONSE REGULATORs Directly Activate WUSCHEL.
    Trends Plant Sci., 2017. 22(10): p. 815-817
    [PMID:28886911]
  9. Takatsuka H,Higaki T,Umeda M
    Actin Reorganization Triggers Rapid Cell Elongation in Roots.
    Plant Physiol., 2018. 178(3): p. 1130-1141
    [PMID:30185441]