PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0735s0030.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family MYB
Protein Properties Length: 665aa    MW: 72841.5 Da    PI: 6.8917
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0735s0030.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding44.34.2e-143683148
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
         Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                            +g+W++eEd  l+d v ++G ++W+++ +  g+ R++k+c+ rw +yl
  SapurV1A.0735s0030.1.p 36 KGPWSAEEDAMLIDHVSKYGERNWNAVHELSGLPRCGKSCRVRWTTYL 83
                            79******************************99***********997 PP
2Myb_DNA-binding44.43.9e-14122169148
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
         Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                             +g+WT+ Ed  l ++v+++G g+W++  ++  + R++k+c++rw ++l
  SapurV1A.0735s0030.1.p 122 KGPWTAAEDAVLMEYVNKHGEGNWNALQKRSVLARCGKSCRLRWTNHL 169
                             79*******************************************996 PP
3Myb_DNA-binding482.9e-15175218146
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
         Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                             +g++++eE+ ++v+ ++q+G++ W++ a++++ gRt++++k++w++
  SapurV1A.0735s0030.1.p 175 KGNFSAEEERIIVEMHAQFGNK-WARMAARLP-GRTDNDIKNFWNT 218
                             79********************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129421.9383187IPR017930Myb domain
SMARTSM007178.7E-143585IPR001005SANT/Myb domain
PfamPF002491.9E-123683IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.9E-2037100IPR009057Homeodomain-like
SuperFamilySSF466892.34E-1737103IPR009057Homeodomain-like
CDDcd001672.36E-103883No hitNo description
PROSITE profilePS5129415.105117169IPR017930Myb domain
SuperFamilySSF466895.03E-29119216IPR009057Homeodomain-like
SMARTSM007171.6E-11121171IPR001005SANT/Myb domain
PfamPF002491.3E-12122169IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.7E-23123176IPR009057Homeodomain-like
CDDcd001675.89E-10124169No hitNo description
PROSITE profilePS5129422.919170224IPR017930Myb domain
SMARTSM007173.7E-15174222IPR001005SANT/Myb domain
PfamPF002491.4E-13175218IPR001005SANT/Myb domain
CDDcd001673.13E-11177218No hitNo description
Gene3DG3DSA:1.10.10.604.4E-24177222IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0090406Cellular Componentpollen tube
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 665 aa     Download sequence    Send to blast
MKEPVGNIDG VGARSEGGSS SMSRGGDEGG EVQLKKGPWS AEEDAMLIDH VSKYGERNWN  60
AVHELSGLPR CGKSCRVRWT TYLRPNAKEG AFSAEEDRII DELDDQISAS NDDEGGGGDL  120
KKGPWTAAED AVLMEYVNKH GEGNWNALQK RSVLARCGKS CRLRWTNHLR PNLKKGNFSA  180
EEERIIVEMH AQFGNKWARM AARLPGRTDN DIKNFWNTRT KRLLRHRLPL YPPEILPQNQ  240
PSPQHNNGSK KSHSLPSTPA SSFTFPTTQL LSPNTPTTPQ NNLTSPARTF TPPATPVALR  300
PSPPPLTPPP VSPLSSPSTA YFPTLPLFDF SLPRNPPILQ IPSRIRNFSR SSSATSPNNN  360
TTVNTTPSLH NITVPTSCFS LPSSPFPATI STSNTSPLSY EIPCCFTNLL CRNNSEFHKE  420
IERENEKLCL LLASVTRTDR PPFAQMLSPT SLDWNSASSS IPAAAAATNT TTMPAKIGRT  480
RIRRMKNVTN SGKGKRNSKG LGATESSRNG LLQNDLLQEV TAVLEVNEKD TSTKQGHLIF  540
EDAQQNPKEI MFDDFCGIQY SDLSSSLSLS SELTPTDGEV AGQLNSSMTE DLTKLLDIFP  600
SSPLQLSDMY TDDISNGQAS VIIDDNNMDI DMQQQIALLF PTTVTDQGSR TVGTGSWDSL  660
PRIY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C3e-30332223157MYB PROTO-ONCOGENE PROTEIN
1h89_C3e-30332223157MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0735s0030.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006376488.10.0myb protein
TrEMBLB9N5V30.0B9N5V3_POPTR; Uncharacterized protein
STRINGPOPTR_0013s13450.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2815233
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06100.12e-52myb domain protein 33