PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0730s0060.2.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family ARR-B
Protein Properties Length: 630aa    MW: 68923.1 Da    PI: 6.6281
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0730s0060.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like89.92.3e-28141194155
                 G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                             kpr++W+ eLH++Fv av+qL G++kA+Pk+il+lm+v+ Lt+e+v+SHLQkYRl
  SapurV1A.0730s0060.2.p 141 KPRVVWSVELHRKFVAAVNQL-GIDKAVPKKILDLMNVEKLTRENVASHLQKYRL 194
                             79*******************.********************************8 PP
2Response_reg53.11.8e-1857340109
                             HHHHESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTESEEEESS--HHHHHH CS
            Response_reg  40 kekdpDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGakdflsKpfdpeelvk 109
                             +++++D+++ D+ mp+mdG++ll+     e++lp+i+++a+g+++++ + +  Ga d+l Kp+ +eel +
  SapurV1A.0730s0060.2.p   5 NKNNFDVVISDVHMPDMDGFKLLELVGL-EMDLPVIMLSANGDPKLVMKGITHGACDYLLKPVRIEELKN 73 
                             4667*******************87754.558***********************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0363921.8E-1361622IPR017053Response regulator B-type, plant
PROSITE profilePS5011031.993179IPR001789Signal transduction response regulator, receiver domain
CDDcd001561.47E-19579No hitNo description
PfamPF000722.7E-15673IPR001789Signal transduction response regulator, receiver domain
SuperFamilySSF521723.98E-23687IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23002.9E-286106No hitNo description
SuperFamilySSF466896.63E-20138198IPR009057Homeodomain-like
PROSITE profilePS5129412.269138197IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.2E-30138199IPR009057Homeodomain-like
TIGRFAMsTIGR015574.4E-25141194IPR006447Myb domain, plants
PfamPF002491.1E-6143193IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0009414Biological Processresponse to water deprivation
GO:0010082Biological Processregulation of root meristem growth
GO:0010380Biological Processregulation of chlorophyll biosynthetic process
GO:0031537Biological Processregulation of anthocyanin metabolic process
GO:0048367Biological Processshoot system development
GO:0080022Biological Processprimary root development
GO:0080036Biological Processregulation of cytokinin-activated signaling pathway
GO:0080113Biological Processregulation of seed growth
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 630 aa     Download sequence    Send to blast
MLRENKNNFD VVISDVHMPD MDGFKLLELV GLEMDLPVIM LSANGDPKLV MKGITHGACD  60
YLLKPVRIEE LKNIWQHVIR RKKCDNKDRN SSDNRDKPNQ GSSEATPDQK LNKKRKDQNE  120
DEDEDRDENE NENEDPATQK KPRVVWSVEL HRKFVAAVNQ LGIDKAVPKK ILDLMNVEKL  180
TRENVASHLQ KYRLYLKRIS TVANQQANMV AALGSSDASY LQMNSMSGLG LHNLAGSGQF  240
HNTPFRSLPS SGMLSRLNSP AVLGIRGLPS PGVIRIGHVQ SAPHSANGLS HFQTVGHPGN  300
NGNILQGMPM SLELDQIQSN KGVNYVRELP THLDDTASFP ISSGSTDMKI IAGSSNSPFV  360
GVSNKPLMLE GHGQGLQDGQ KFGNQSSLAA GALDPGYSSH FPDHGRCNDN WSNAVQSNGV  420
QSNSFTLNDC FKQSTLHPSA IRDSMSAMAL QSRNNHCDVS SISTLPIHLQ DSKADLQCQV  480
AAVSRDAGQI INNGPLGWDD HRQDDPYHAN GISNSVNSAI PNGNGSLIGR SLDNMISQRP  540
RSFSSTGQSN FIDTSLMKHN EVESSAMETL VRSKDGYLMG QQKPQDSYVS NNFGSLEDFV  600
SVMVKQEQDK VKLPEGDLGS CGYSLWTCI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A7e-26139200364ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0730s0060.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFN9081440.0FN908144.1 Populus x canadensis mRNA for putative B-type response regulator 22 (rr22 gene), cultivar Dorskamp.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024459850.10.0two-component response regulator ARR12 isoform X1
SwissprotA2X1N21e-122ORR24_ORYSI; Two-component response regulator ORR24
SwissprotQ6H8051e-122ORR24_ORYSJ; Two-component response regulator ORR24
TrEMBLA0A2K2A8M00.0A0A2K2A8M0_POPTR; Two-component response regulator
STRINGPOPTR_0006s27800.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G25180.11e-113response regulator 12
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]